PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr12093.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

C3H

Protein Properties

Length: 793aa MW: 85234.1 Da PI: 6.5586

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr12093.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.4	5.2e-08	354	374	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Dr12093.1 354 PCPDFRK-GACRRGDLCEYAHG 374 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 793 aa Download sequence
MIRQLKWPAP VSLILRSSVP SLPEKVLLMP LLQQLVEIGR TAASRSMFGG PERVRPISEE 60 EEAAAAAAAV MNPVVGSMSG ELSVDVSASA TAEDSFSSLL ELAANNDLEG FKKAVELEAA 120 GIDEIGLWYG RKKGSSQMVL QHRTPLMVAA TYGSLEVLGF ILSLTSIDVN RACGPDKTTA 180 LHCAASGGAV HAAEAVKMLI AAGADPNLED ANGLRPADAI VISPKLIDVK NALEELLGVA 240 VVERHRALRI SINNSNSPPF SSSPDRDGSP TSELNSPHGL PHGPTSEKKE YPVDPSLPDI 300 KNSIYATDEF RMFSFKVRPC SRAYSHDWTE CPFVHPGENA RRRDPRKFHY SCVPCPDFRK 360 GACRRGDLCE YAHGVFECWL HPAQYRTRLC KDGTGCTRRV CFFAHTNEEL RPLLMSTGSA 420 VPSPRSSMDM AAAMNLLPGS PSSVSVMSPF TPPMSPSANG MGLSSMNWPQ PNVPTLHLPG 480 SNLQSSRLRS SLSARDMPMD DLLMMQDFDA QQLLNEFCFS SGQARLGSSS AGGNRSIRTK 540 TLNPSNLDDL FSAEIASSPR YNADQGAMFS PTHKSAVLNQ FQQQQQQQQS LLSPINTSVF 600 SPKAVDPQQL SGHPSLLQAS LGISSPGRMS PRGVEPISPL SSRMAAFAQR EKQQQQLRSL 660 SSRDLYSGNS VAIGSPVNSS WSNTKWGSPS GTLDWGVNGA ELGRLKRSNS FELRSGGEEP 720 DFSWVHSLVK ESPTENKEKA MDTAAVAAAR PSSSEPAGAG GDGSNPSAQV DGLDHAVLGA 780 WLEQMQLDQI GVQ

Sequence ? help Back to Top

Protein Sequence Length: 793 aa Download sequence

MIRQLKWPAP VSLILRSSVP SLPEKVLLMP LLQQLVEIGR TAASRSMFGG PERVRPISEE  60
EEAAAAAAAV MNPVVGSMSG ELSVDVSASA TAEDSFSSLL ELAANNDLEG FKKAVELEAA  120
GIDEIGLWYG RKKGSSQMVL QHRTPLMVAA TYGSLEVLGF ILSLTSIDVN RACGPDKTTA  180
LHCAASGGAV HAAEAVKMLI AAGADPNLED ANGLRPADAI VISPKLIDVK NALEELLGVA  240
VVERHRALRI SINNSNSPPF SSSPDRDGSP TSELNSPHGL PHGPTSEKKE YPVDPSLPDI  300
KNSIYATDEF RMFSFKVRPC SRAYSHDWTE CPFVHPGENA RRRDPRKFHY SCVPCPDFRK  360
GACRRGDLCE YAHGVFECWL HPAQYRTRLC KDGTGCTRRV CFFAHTNEEL RPLLMSTGSA  420
VPSPRSSMDM AAAMNLLPGS PSSVSVMSPF TPPMSPSANG MGLSSMNWPQ PNVPTLHLPG  480
SNLQSSRLRS SLSARDMPMD DLLMMQDFDA QQLLNEFCFS SGQARLGSSS AGGNRSIRTK  540
TLNPSNLDDL FSAEIASSPR YNADQGAMFS PTHKSAVLNQ FQQQQQQQQS LLSPINTSVF  600
SPKAVDPQQL SGHPSLLQAS LGISSPGRMS PRGVEPISPL SSRMAAFAQR EKQQQQLRSL  660
SSRDLYSGNS VAIGSPVNSS WSNTKWGSPS GTLDWGVNGA ELGRLKRSNS FELRSGGEEP  720
DFSWVHSLVK ESPTENKEKA MDTAAVAAAR PSSSEPAGAG GDGSNPSAQV DGLDHAVLGA  780
WLEQMQLDQI GVQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein

Link Out ? help Back to Top
Ensembl	Dr12093.1