PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr11815.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

Trihelix

Protein Properties

Length: 598aa MW: 67637 Da PI: 7.7967

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr11815.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	100.7	1.2e-31	491	575	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev+aLi++r+++e r+++ lk+plWeevs+ m++ g+ rs+k+Ckekwen+nk+++k+ke+ kkr + +s+tcpyf+ql+ Dr11815.1 491 RWPKAEVHALIRVRSSLEMRFQEPGLKGPLWEEVSSIMASLGYCRSSKRCKEKWENINKYFRKTKESGKKR-PMHSKTCPYFHQLD 575 8******************************************************************98.99*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 598 aa Download sequence
MQSGFGTGGG GGSGGSGVSE LQQFMVEGGC PSSSSTSIFS ISTSNTNLHP HHHHHHHHHH 60 PHPHHHHPPL QPPPHFSHFQ SIPITQQLFH QAHHPFQLFS HSHHPELGLD LESGPENSNS 120 ATVQPGNGAP PTSFLTAAMS FKLGVNDNSS REDEGILHGD DASDSHVHPW QREEESTIKE 180 PFWRPLDIDY INNKRSTTNE KQQQQQQQQH LQESSSKYYK KTNKEVNEQQ QQQQQGNNNG 240 SNYKLFSELE AIYKPGNNNV LGGGDAGGGS SSANNQTGSG SALTGDENPL MTLVAPGPIS 300 EQRISTINQI SDTSTGEEAA PMKKHIKSGR RKRKRRQQQQ LSSLTSFFEN MVKQLMDHQE 360 GLHRKFLEVI EKRDQDRMVR EETWRKEEAA XNSRETSMRA QERALASSRE TAIISFLEKI 420 TGETLNLPTK SQFQSSKSYH HSQNEDNNAE HAYDPLDLSQ EFMINNNNNN NNNNNNNVDV 480 NNNQIHMNSS RWPKAEVHAL IRVRSSLEMR FQEPGLKGPL WEEVSSIMAS LGYCRSSKRC 540 KEKWENINKY FRKTKESGKK RPMHSKTCPY FHQLDQLYSK RLLHFQARKW NSESVGSA

Sequence ? help Back to Top

Protein Sequence Length: 598 aa Download sequence

MQSGFGTGGG GGSGGSGVSE LQQFMVEGGC PSSSSTSIFS ISTSNTNLHP HHHHHHHHHH  60
PHPHHHHPPL QPPPHFSHFQ SIPITQQLFH QAHHPFQLFS HSHHPELGLD LESGPENSNS  120
ATVQPGNGAP PTSFLTAAMS FKLGVNDNSS REDEGILHGD DASDSHVHPW QREEESTIKE  180
PFWRPLDIDY INNKRSTTNE KQQQQQQQQH LQESSSKYYK KTNKEVNEQQ QQQQQGNNNG  240
SNYKLFSELE AIYKPGNNNV LGGGDAGGGS SSANNQTGSG SALTGDENPL MTLVAPGPIS  300
EQRISTINQI SDTSTGEEAA PMKKHIKSGR RKRKRRQQQQ LSSLTSFFEN MVKQLMDHQE  360
GLHRKFLEVI EKRDQDRMVR EETWRKEEAA XNSRETSMRA QERALASSRE TAIISFLEKI  420
TGETLNLPTK SQFQSSKSYH HSQNEDNNAE HAYDPLDLSQ EFMINNNNNN NNNNNNNVDV  480
NNNQIHMNSS RWPKAEVHAL IRVRSSLEMR FQEPGLKGPL WEEVSSIMAS LGYCRSSKRC  540
KEKWENINKY FRKTKESGKK RPMHSKTCPY FHQLDQLYSK RLLHFQARKW NSESVGSA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	329	337	GRRKRKRRQ
2	330	335	RRKRKR
3	330	336	RRKRKRR
4	330	337	RRKRKRRQ
5	331	336	RKRKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	1e-55	Trihelix family protein

Link Out ? help Back to Top
Ensembl	Dr11815.1