PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr11748.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB_related

Protein Properties

Length: 758aa MW: 83175.5 Da PI: 6.8897

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr11748.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.2	6.1e-16	23	67	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a k++G W +I +++g ++t+ q++s+ qk+ Dr11748.1 23 RERWTEEEHSRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 67 78****************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 758 aa Download sequence
MVEWIQKLDL LEARKPYTIT KQRERWTEEE HSRFLEALKL YGRAWQRIEE HIGTKTAVQI 60 RSHAQKFFSK PHWHKHDVVT YCMGCPFEAF GQVLKAAVVA DQLGEFMIWL TILLQLEKEA 120 LLKGIPLGQA HDIDIPPPRP KRKPSNPYPR KTGPGSLSSS AEMKDEKVSK SHPLRTTSQC 180 LGNDKITSKE KSGALETHGR KETSEAGSCS EHNLFQDVPF APMSSVHRQC SKPSSFREFV 240 PTVGKTEEKT PMSKGNEEPK SNVVANYEKK GVCGTLQVAP AIEENTNMSE KPENWQGFHS 300 YQKHVSMPLK ESTSAKSTET ELSDGKIPAP VALNPGVQPN VSPFITSMGT AIPEYSNPGT 360 SAIPQPVPSF TPYALFGTNQ DVAYRSFMNF SSTFSSLIVS TLLQNPAVHA AACMAASFWP 420 HADIDTVGNT TSEVLDGEAP APASQMNSTP NIAAIATATV AAAAAWWTTH GLLPFFPHHL 480 QADFPFAPTT TATVPPTDMA QAPGIDKRNE TVRPPAEDQK LVSTELSGLP AKNLSLESSA 540 SSDLDESELG EKLQCNSDQK LLGTDNGSKN KADRSSCSSN TPSSSEVELV NAMEKQSEPK 600 DAKQVHSSCP SSETNHRRAR GSGTTYEAWK EVSEEGRLAF QALFTRAVLP QSFSPPHRDD 660 NGAATMAVDL NSIACSPTDM MHHSEELPKE DHSAMKQNGD TDKGCCLMNK LAYAKLKARR 720 TGFKPYKRCS MEVKENRVVP NEDNVNKRMR LDGEHGST

Sequence ? help Back to Top

Protein Sequence Length: 758 aa Download sequence

MVEWIQKLDL LEARKPYTIT KQRERWTEEE HSRFLEALKL YGRAWQRIEE HIGTKTAVQI  60
RSHAQKFFSK PHWHKHDVVT YCMGCPFEAF GQVLKAAVVA DQLGEFMIWL TILLQLEKEA  120
LLKGIPLGQA HDIDIPPPRP KRKPSNPYPR KTGPGSLSSS AEMKDEKVSK SHPLRTTSQC  180
LGNDKITSKE KSGALETHGR KETSEAGSCS EHNLFQDVPF APMSSVHRQC SKPSSFREFV  240
PTVGKTEEKT PMSKGNEEPK SNVVANYEKK GVCGTLQVAP AIEENTNMSE KPENWQGFHS  300
YQKHVSMPLK ESTSAKSTET ELSDGKIPAP VALNPGVQPN VSPFITSMGT AIPEYSNPGT  360
SAIPQPVPSF TPYALFGTNQ DVAYRSFMNF SSTFSSLIVS TLLQNPAVHA AACMAASFWP  420
HADIDTVGNT TSEVLDGEAP APASQMNSTP NIAAIATATV AAAAAWWTTH GLLPFFPHHL  480
QADFPFAPTT TATVPPTDMA QAPGIDKRNE TVRPPAEDQK LVSTELSGLP AKNLSLESSA  540
SSDLDESELG EKLQCNSDQK LLGTDNGSKN KADRSSCSSN TPSSSEVELV NAMEKQSEPK  600
DAKQVHSSCP SSETNHRRAR GSGTTYEAWK EVSEEGRLAF QALFTRAVLP QSFSPPHRDD  660
NGAATMAVDL NSIACSPTDM MHHSEELPKE DHSAMKQNGD TDKGCCLMNK LAYAKLKARR  720
TGFKPYKRCS MEVKENRVVP NEDNVNKRMR LDGEHGST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46830.1	1e-39	MYB_related family protein

Link Out ? help Back to Top
Ensembl	Dr11748.1