PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dr11354.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
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Family | C3H | ||||||||
Protein Properties | Length: 487aa MW: 54070.8 Da PI: 6.4019 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35 | 2.4e-11 | 87 | 112 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +f+rtG C yG++CkF+H+ Dr11354.1 87 PGEPDCAYFLRTGLCGYGSKCKFNHP 112 5789*********************9 PP | |||||||
2 | zf-CCCH | 27.7 | 4.7e-09 | 191 | 216 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f++rtG Cky ++C+F+H++ Dr11354.1 191 GEKECPFYLRTGCCKYSASCRFHHPE 216 7899********************96 PP | |||||||
3 | zf-CCCH | 35.9 | 1.3e-11 | 380 | 404 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C++f++ G+Ck+G +CkF+H++ Dr11354.1 380 QPECQYFMKHGECKFGLSCKFSHPK 404 799********************96 PP | |||||||
4 | zf-CCCH | 32.6 | 1.4e-10 | 425 | 450 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++ +G+CkyG+ CkF H++ Dr11354.1 425 DQPICAHYDMYGICKYGPACKFDHPM 450 5799********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 487 aa Download sequence |
MNAEISMEFS EEEAALGLEE DAVKACQSSP SPSSPETLVE QIENLKFDEE EKQRDEEKSE 60 GEFLDRESKI CDEGNEKSEG FRYPLRPGEP DCAYFLRTGL CGYGSKCKFN HPTTRNSLAQ 120 GIMWGPSETI QAGEGKETKA WLQGEGQLKC KYYSMPSGCK YGKSCKYGHR RENSGAEQVE 180 LNFLGLPIRP GEKECPFYLR TGCCKYSASC RFHHPEPVSV PANYLTARFE KDGYCQGLAS 240 GKSKSPKASF PLQRASVELS SSLDASSPSY IPRILLPHQV FHTSKLSTEY GEYQSYQVGS 300 ENIATIVVWS HRGAWMYETL LLMALRQEAE KAPAEAPFTP DSDWSKQETP ATDLDCHPPK 360 ADDLVHQHAQ TELYPERAGQ PECQYFMKHG ECKFGLSCKF SHPKTRCSKA SVAILSPLGL 420 PLRKDQPICA HYDMYGICKY GPACKFDHPM KFSHSPSTTA KSCTHSSSVD VPGAVKLSSG 480 SALLQQS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63260.2 | 2e-70 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | Dr11354.1 |