PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dr09910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
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Family | C3H | ||||||||
Protein Properties | Length: 451aa MW: 49034.1 Da PI: 7.5765 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.4 | 2.9e-09 | 61 | 87 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C ++ rtG C++G +C+F+H+p Dr09910.1 61 PGEPDCAYYIRTGLCRFGMTCRFNHPP 87 5789*********************97 PP | |||||||
2 | zf-CCCH | 35.8 | 1.3e-11 | 145 | 169 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ Dr09910.1 145 EKECAYYLRTGQCKFGNTCKFHHPQ 169 579********************97 PP | |||||||
3 | zf-CCCH | 39.2 | 1.2e-12 | 305 | 330 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ Dr09910.1 305 DQPECQFYMKTGDCKFGAVCKFHHPR 330 689*********************96 PP | |||||||
4 | zf-CCCH | 40.1 | 6.3e-13 | 350 | 376 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ Dr09910.1 350 PGEPLCIFYSRYGICKFGPNCKFDHPM 376 589**********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 451 aa Download sequence |
MDYEGVGIQM HGGGVRGAVV AVAVAEGSAS AGATDIDEET LWQMNLRQSE SMESGLYPER 60 PGEPDCAYYI RTGLCRFGMT CRFNHPPNRK LMEVKSSDKV YLVLSSCALT DSAASCSSDF 120 FSAVAAARIK GGYPERVGQP ECQNEKECAY YLRTGQCKFG NTCKFHHPQP SNSMLSLRGS 180 PGYPSVHSPT TPGQQSYPGA ITNWPISRAS FIPSPRWQGP SSYAQLILPQ GLVQVPGWNA 240 YPGQLGSVSS PDSQQQSSGS NQYYGISRQN ETNVTQGTYP YHRSGSIPMG LYALQREHIF 300 PERPDQPECQ FYMKTGDCKF GAVCKFHHPR ERLIPAPNCL LSPMGLPLRP GEPLCIFYSR 360 YGICKFGPNC KFDHPMMYSP AAPTADVPVV RRLLGSSTGS PALTLTSEGP VEAGPGKSRR 420 LSLSESRQMA SGEENTEAEG SHTTSQVSSF S |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-123 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | Dr09910.1 |