PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr08983.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family GRAS
Protein Properties Length: 460aa    MW: 52053.8 Da    PI: 6.3111
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr08983.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS299.21e-91654582374
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                ++lL ecA+a+s++d ++++++L+ l+el+sp+gd+ q+la+yf++AL  + ++s+++ +++l + +++++  +++ ++   f+evsP+ +f+h++ N a
  Dr08983.1  65 EKLLRECAKAISDKDSTKIHHFLWMLNELSSPYGDTDQKLASYFLQALFCKATDSGDRSFNTLISIAEKNHCFETARKVILKFQEVSPWTTFGHVASNCA 164
                6899*********************************************************997777764445555555556****************** PP

       GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.vakrledleleeLrvkpgE 200
                Ilea+ege ++HiiD++ ++++QWp+Ll+aLa+R++++p+lR+ +v+s +    + ++e+g+r++kfA+ +gvpfef+v+   +rl +l+ e+++++++E
  Dr08983.1 165 ILEALEGEAKLHIIDMSNTYCTQWPTLLEALATRNDDTPHLRLSVVVS-ARAGGTVIKEIGQRMEKFARLMGVPFEFQVVsGFTRLGELKKEDFSLREDE 263
                ************************************************.557899************************84456**************** PP

       GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklp.reseerikvErellgreivnv 297
                ++a+nl+ +l r+      ++ er+++L+++ +l+Pkvv+vve+ead   n+  F+  f e+l++y ++f +l+++++ ++s+er ++Ere  +r+i +v
  Dr08983.1 264 VVAINLIGALRRVN-----ID-ERSDFLRMIHQLKPKVVTVVEEEADFtsNKDVFVMCFEECLRFYGVFFQMLQESFGvSTSNERLMLERE-CSRSILSV 356
                ************97.....44.488********************99877999********************666652677*********.89****** PP

       GRAS 298 vacega.......e..rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee...............sgslv..lgWkdrpLvsvS 371
                +aceg+       e    er+e+ ++W+erl+ + F pv+ls++a +++k+ll++++  g+++  +               +g++   l Wkd+++v++S
  Dr08983.1 357 LACEGDgggggngEyyYCERREKGRQWSERLRGVEFMPVNLSDDALDDVKALLKRYQ-GGWSLVTStknstssqgedddddHGCFGvyLAWKDEAVVWAS 455
                ****973333332122479**************************************.555555222345566666677767775345************ PP

       GRAS 372 aWr 374
                aW+
  Dr08983.1 456 AWK 458
                **8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    
MDISLPSPKP PPHSILIHSH KHLLHHHHHH QASMQNSSYH HHATTTMSIT TSTSSSTNDE  60
KKWAEKLLRE CAKAISDKDS TKIHHFLWML NELSSPYGDT DQKLASYFLQ ALFCKATDSG  120
DRSFNTLISI AEKNHCFETA RKVILKFQEV SPWTTFGHVA SNCAILEALE GEAKLHIIDM  180
SNTYCTQWPT LLEALATRND DTPHLRLSVV VSARAGGTVI KEIGQRMEKF ARLMGVPFEF  240
QVVSGFTRLG ELKKEDFSLR EDEVVAINLI GALRRVNIDE RSDFLRMIHQ LKPKVVTVVE  300
EEADFTSNKD VFVMCFEECL RFYGVFFQML QESFGVSTSN ERLMLERECS RSILSVLACE  360
GDGGGGGNGE YYYCERREKG RQWSERLRGV EFMPVNLSDD ALDDVKALLK RYQGGWSLVT  420
STKNSTSSQG EDDDDDHGCF GVYLAWKDEA VVWASAWKPS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-125GRAS family protein