PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr08435.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

CPP

Protein Properties

Length: 406aa MW: 46017.2 Da PI: 6.173

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr08435.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	32.5	1.7e-10	161	196	5	40
TCR 5 gCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 C C+ks+Clk C C+++g+ C+e C+C++C N+ Dr08435.1 161 LCYCRKSECLKIDCPCYSSGVPCKELCQCQGCLNCV 196 6*********************************75 PP
2	TCR	39.2	1.4e-12	251	287	3	39
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 +k+C+Ck+s+Clk CeCfa + Cse C C++C+N+ Dr08435.1 251 SKRCSCKNSECLKFHCECFATSSRCSELCICQKCHNR 287 699*********************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MAKNSNHKSS GDVEMPQNSN HKSNGDVEMP QNSNHKSNGD VEMAQDSNNK SNGDVEMIQN 60 SNHEAPRVPE VIVVQRGEWS EFERDGLLYC ACEDSSLCFT ELACVKIVRT FWKMKTSKRS 120 LKWPGFCFLS LSRWPMLNNY YLKLQSSLWL QEPSSQYIRE LCYCRKSECL KIDCPCYSSG 180 VPCKELCQCQ GCLNCVSVMS DSVIDPELMG NVQPLAIQDK EMEAFWWFTN PQAISAPEIP 240 QHFPGTQWGP SKRCSCKNSE CLKFHCECFA TSSRCSELCI CQKCHNRIGD EESIIMTARK 300 VVESRDPLAF TPKSILISYF SDYVWPRGSS SKNQTYDTAM YTSGCACQYP GCGDRSCECF 360 KDVHPTANVK DVRIYAESNH QHFEQSKACG VSLDNDTRLI VMLILD

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MAKNSNHKSS GDVEMPQNSN HKSNGDVEMP QNSNHKSNGD VEMAQDSNNK SNGDVEMIQN  60
SNHEAPRVPE VIVVQRGEWS EFERDGLLYC ACEDSSLCFT ELACVKIVRT FWKMKTSKRS  120
LKWPGFCFLS LSRWPMLNNY YLKLQSSLWL QEPSSQYIRE LCYCRKSECL KIDCPCYSSG  180
VPCKELCQCQ GCLNCVSVMS DSVIDPELMG NVQPLAIQDK EMEAFWWFTN PQAISAPEIP  240
QHFPGTQWGP SKRCSCKNSE CLKFHCECFA TSSRCSELCI CQKCHNRIGD EESIIMTARK  300
VVESRDPLAF TPKSILISYF SDYVWPRGSS SKNQTYDTAM YTSGCACQYP GCGDRSCECF  360
KDVHPTANVK DVRIYAESNH QHFEQSKACG VSLDNDTRLI VMLILD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04850.1	2e-20	CPP family protein

Link Out ? help Back to Top
Ensembl	Dr08435.1