PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G04850.1 | ||||||||
Common Name | T9J14.20, TCX4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | CPP | ||||||||
Protein Properties | Length: 639aa MW: 70973.6 Da PI: 4.9815 | ||||||||
Description | Tesmin/TSO1-like CXC domain-containing protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 48 | 2.5e-15 | 451 | 489 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+C+C+ks+Clk+YCeCf+ag +C+e C+C++C+Nk AT3G04850.1 451 SCKRCKCRKSQCLKLYCECFSAGLFCGEPCSCQNCFNKP 489 589**********************************96 PP | |||||||
2 | TCR | 50.2 | 5.1e-16 | 536 | 575 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnC+ks C kkYCeCf g+ Cs++C+C +CkN+ AT3G04850.1 536 RHKRGCNCRKSGCSKKYCECFMMGVGCSSNCRCMGCKNTF 575 589***********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 8.3E-18 | 450 | 491 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 35.966 | 451 | 576 | IPR005172 | CRC domain |
Pfam | PF03638 | 7.7E-11 | 453 | 488 | IPR005172 | CRC domain |
SMART | SM01114 | 3.7E-18 | 536 | 577 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.8E-11 | 538 | 574 | IPR005172 | CRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 639 aa Download sequence Send to blast |
MDTPDKNRIS AVSFCNFEDS PVFQYINDLS PIEPVKPGRP ENILHSLVFT SPSSSSSLFC 60 SPQLNSYRDS RFFIKRHRSL DLSSPVVLIG ETLKNSPDAL WEEKLKCRPE KLENVSEPKP 120 FKEQISLAIE LANSLKHGRD GCDIQMVSCD EVPMDADDEI GSGGGSRELS DELCRQSFDP 180 LDFDADSDGV LHTDEMEAES GFGKEVIMFD VADIQNYEQQ IPRTTDPRFY SLASEPQQFS 240 IYCNNSNYVE EREGSCSVQV AAGAPDINLS CSSKVAAIDS TAEAEDKEDK DLQPSGKQRS 300 VRRRCLTFDM GGSHKRIPLR DSTNDLPLDS TSINKAPSPQ NCLDTSKQDT DEILPIPRTI 360 GLHLNGFVNP SVSSGRKKKK IKDGQAFPST TFHYNIEDEF STPVSTKRDL VVFSDVKIME 420 PPERSVEGEC FDQLMAMENR QLSQGLDELG SCKRCKCRKS QCLKLYCECF SAGLFCGEPC 480 SCQNCFNKPI HEDLVMKSRE VIKARNPLAF APKVVSTSDT VIDLWVENSK TPASARHKRG 540 CNCRKSGCSK KYCECFMMGV GCSSNCRCMG CKNTFGHTNE QCAGDSDVVT INDEAKHYGD 600 HGDASRQNEE ILTSERNRLL LPGSVAFRSL TSLSNLSEL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 2e-16 | 453 | 573 | 12 | 120 | Protein lin-54 homolog |
5fd3_B | 2e-16 | 453 | 573 | 12 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AT3G04850 | |||||
AtGenExpress | AT3G04850 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G04850.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G04850 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT003926 | 0.0 | BT003926.1 Arabidopsis thaliana clone RAFL15-25-I04 (R20696) unknown protein (At3g04850) mRNA, complete cds. | |||
GenBank | BT005010 | 0.0 | BT005010.1 Arabidopsis thaliana clone U20696 unknown protein (At3g04850) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_187136.3 | 0.0 | Tesmin/TSO1-like CXC domain-containing protein | ||||
Swissprot | Q84JZ8 | 0.0 | TCX4_ARATH; Protein tesmin/TSO1-like CXC 4 | ||||
TrEMBL | A0A178VLW7 | 0.0 | A0A178VLW7_ARATH; Uncharacterized protein | ||||
STRING | AT3G04850.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14840 | 16 | 20 | Representative plant | OGRP993 | 17 | 55 |
Link Out ? help Back to Top | |
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Phytozome | AT3G04850.1 |
Entrez Gene | 819645 |
iHOP | AT3G04850 |
wikigenes | AT3G04850 |
Publications ? help Back to Top | |||
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