PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr08434.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

CPP

Protein Properties

Length: 777aa MW: 85401.7 Da PI: 5.7326

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr08434.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	51.5	2e-16	483	521	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkks+Clk+YCeCfaag++C e C+C++C+Nk Dr08434.1 483 SCKRCNCKKSQCLKLYCECFAAGVFCVEPCSCQGCFNKP 521 689**********************************96 PP
2	TCR	50.7	3.5e-16	568	606	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN Dr08434.1 568 RHKRGCNCKKSSCLKKYCECYQGGVGCSVSCRCEGCKNA 606 589***********************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 777 aa Download sequence
MDTPERSKVV TPISKFEDSP VFNFINNLSP IQPVKSVNAA QTFHSLSYAS ITSIFTSPHV 60 NPQKELRSLL RHSFSELPKH ETSSDIDNGH GLCVGEAQAI RSSGCTVKCS LNEANLDPPD 120 ECPDVSSDLA KSEPCDGGSP NHNITPFYIA RSDLKWDVSL DKRKGLFLTQ VEHQDKHDSK 180 PNEEELTQCG WENLIGDDAD NLLIFDPSTE ADAFDGPNEN SQENDVKLCN SFPSSLQRDV 240 ADDVAEGLQL NVSFLPCPEE MNSVPDVDHI KEQVEMDQTP QIFLENFQNH SLTSDRNHKL 300 DYGFTSGISI ACKVEFQQQR GTRRRCLNFE VPGVPKMSLQ SDSTSHNLIS CPSDEEHPSV 360 DSHPVPLRAG SPCMLPGIGL HLNTLAKTSR DKLLTRGAML SGRRLISMPS SAGPLSPFTG 420 QEHQDKSLSI QRDLELPGNE IQDLMIVQND ASEVPALTYG EDLRPISPKK KRRKSEIGSE 480 SDSCKRCNCK KSQCLKLYCE CFAAGVFCVE PCSCQGCFNK PIHQEKVLTT RKQIESRNPI 540 AFAPKVIRAS ESSCDTGEDT NKTPASARHK RGCNCKKSSC LKKYCECYQG GVGCSVSCRC 600 EGCKNAFGRK DGISLLGDEE FDQEEEKNAC EETDKPDEGQ QNANIQTDIP QFPENMSQST 660 PTQDFRPPQT LAPTVGDSSQ LESCTTLRNC DIPLPQCGKF GSLGKSILGD DTPAILRGNR 720 SLISGVKASS PNRKRVSPPH IGTRLTPNHK GGRKLILKSI PSFPSLNTDV NSENPMK

Sequence ? help Back to Top

Protein Sequence Length: 777 aa Download sequence

MDTPERSKVV TPISKFEDSP VFNFINNLSP IQPVKSVNAA QTFHSLSYAS ITSIFTSPHV  60
NPQKELRSLL RHSFSELPKH ETSSDIDNGH GLCVGEAQAI RSSGCTVKCS LNEANLDPPD  120
ECPDVSSDLA KSEPCDGGSP NHNITPFYIA RSDLKWDVSL DKRKGLFLTQ VEHQDKHDSK  180
PNEEELTQCG WENLIGDDAD NLLIFDPSTE ADAFDGPNEN SQENDVKLCN SFPSSLQRDV  240
ADDVAEGLQL NVSFLPCPEE MNSVPDVDHI KEQVEMDQTP QIFLENFQNH SLTSDRNHKL  300
DYGFTSGISI ACKVEFQQQR GTRRRCLNFE VPGVPKMSLQ SDSTSHNLIS CPSDEEHPSV  360
DSHPVPLRAG SPCMLPGIGL HLNTLAKTSR DKLLTRGAML SGRRLISMPS SAGPLSPFTG  420
QEHQDKSLSI QRDLELPGNE IQDLMIVQND ASEVPALTYG EDLRPISPKK KRRKSEIGSE  480
SDSCKRCNCK KSQCLKLYCE CFAAGVFCVE PCSCQGCFNK PIHQEKVLTT RKQIESRNPI  540
AFAPKVIRAS ESSCDTGEDT NKTPASARHK RGCNCKKSSC LKKYCECYQG GVGCSVSCRC  600
EGCKNAFGRK DGISLLGDEE FDQEEEKNAC EETDKPDEGQ QNANIQTDIP QFPENMSQST  660
PTQDFRPPQT LAPTVGDSSQ LESCTTLRNC DIPLPQCGKF GSLGKSILGD DTPAILRGNR  720
SLISGVKASS PNRKRVSPPH IGTRLTPNHK GGRKLILKSI PSFPSLNTDV NSENPMK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	468	474	PKKKRRK
2	469	473	KKKRR
3	469	474	KKKRRK
4	470	474	KKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	1e-101	CPP family protein

Link Out ? help Back to Top
Ensembl	Dr08434.1