PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr08365.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family MYB_related
Protein Properties Length: 313aa    MW: 33864.2 Da    PI: 7.3049
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr08365.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.92.7e-1482126347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ I++ + ++Rt+ q+ s+ qky
        Dr08365.1  82 PWTEEEHRTFLAGLEKLGKGDWRGISKNFVTTRTPTQVASHAQKY 126
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    
MDREGERKGL KLFGVRIGEV RMGSGVDEEE EEVMRKSSSM GNLAAAEPAA ESGAGDHGYL  60
SDGGLIQSSR RRVGQERKRG VPWTEEEHRT FLAGLEKLGK GDWRGISKNF VTTRTPTQVA  120
SHAQKYFLRQ SNPNKKKRRS SLFDVVMNDK TQSTANETTP TMPMNSFDEV KELSNPHLVG  180
TSTSTTTQIA SRGSECPTAL PLVMNSNVIP MFSTADPVVR ASGSTEGQAM PALSFVPTHY  240
MKDMSVAPSH DPMATICAPD FLKLSLSHPH CSQPATGTSS LIETSDLELS IAPPQPHTLS  300
KLSSQASSSV IMV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135139KKKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-42MYB_related family protein