PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr07967.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family B3
Protein Properties Length: 401aa    MW: 45828 Da    PI: 10.1719
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr07967.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.86.6e-2112102199
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                ffk++     l s++lv+p  f+++++g+     tl+l  +sg++W+v+l   k+++++ l kGW eFv ++ L +gDf+vF++d++s f  +v +f++
  Dr07967.1  12 FFKIF--MPLLHSQQLVVPSGFLKHMEGD--LAETLSLIGPSGNQWDVNL--MKRGSTMELDKGWGEFVVDHSLTTGDFLVFRYDSDSHF--TVLIFDQ 102
                78888..55677889********888888..5569***************..88888889************************999999..9999986 PP
2B357.42.7e-18297384598
                -..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   5 ltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                +  s+   + ++ lp  fa++h  ++   ++++tl d++gr W+v +    +++r  l++GW++F  an+L++gD+++F+l++    e++v++fr
  Dr07967.1 297 MQDSYCYHHFQVNLPFYFAKKHmVLV---NTKMTLWDPEGRPWTVAY--LYYRRRAGLRSGWNKFSYANNLETGDVCIFELIK--PDEMRVHIFR 384
                556888889999**********6444...457***************..55555667***********************997..5557999998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    
MGVTRRRRSP HFFKIFMPLL HSQQLVVPSG FLKHMEGDLA ETLSLIGPSG NQWDVNLMKR  60
GSTMELDKGW GEFVVDHSLT TGDFLVFRYD SDSHFTVLIF DQNSCEKETA FSAKPSKPTI  120
DHGRSKSKPK VKMPEENQEA QNSCEKETAF SAKPSKPTID HGRSKSKLKL KMAEENQEAQ  180
NNSKRKRESD ACANVTKKLN NSDLSIEGYQ SYSSDGAFSA SLSASTSSDA NDESKRRKVR  240
PTVSSKKGTK ESPAMQGESF SAPLKSQRRQ VTQTELDRAL QMSKSFKSAY PFTRLVMQDS  300
YCYHHFQVNL PFYFAKKHMV LVNTKMTLWD PEGRPWTVAY LYYRRRAGLR SGWNKFSYAN  360
NLETGDVCIF ELIKPDEMRV HIFRVVEPVT PLIRFNPRKR K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.18e-17B3 family protein