PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr05981.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

Protein Properties

Length: 348aa MW: 40220.4 Da PI: 9.2267

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr05981.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	62.1	9.2e-20	25	111	1	94
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffk++ + + s+++++p k ++++ ++ s+ + l+d+ g+sW+v++ + ++g+ ++++GWkeFv+a+ L+ gD+++Fk++g+s+f +v Dr05981.1 25 FFKTM--NGDF-SKQMSIPEKLTSNFCKV--VSQNIELKDPIGNSWNVRI--EERDGALWFRNGWKEFVEAHCLEIGDVLMFKYNGKSCFDVLV 111 67777..4444.456*****9777444..3557***********..*******************************999994444 PP
2	B3	53.1	5.7e-17	254	343	3	95
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 +++ +v++++ l++p f+++ + +s+ + l+++ g rsW v++ +++ + +t+ Wk+Fv +n+LkegD+++F+l+g+ +e +++v Dr05981.1 254 SIMHLTHVSNRCFLTIPSGFVRRLPN---TSQIILLQTPGGeRSWAVNY--LVQKNITGFTGQWKRFVIDNKLKEGDICLFELIGKkKEIRMNVY 343 5565678999*********99853...4667999998889***..666666669999*******************97666666655 PP

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence
MVDNCESCKK WREHYFWDHA KCIHFFKTMN GDFSKQMSIP EKLTSNFCKV VSQNIELKDP 60 IGNSWNVRIE ERDGALWFRN GWKEFVEAHC LEIGDVLMFK YNGKSCFDVL VMDGTGCEKV 120 SAYFIKKNNK KRNIGCVERD DNSVEIINTP FCSPTVIECD SSSSSEGVQC ELNHRANQSE 180 RNSSHKIDDV LLNKKRKPGR PCINSEAQVE LAMPRKFNLG NIIVSRKKHC TALEKKSLVQ 240 LVRSVRPKYP FFVSIMHLTH VSNRCFLTIP SGFVRRLPNT SQIILLQTPG GERSWAVNYL 300 VQKNITGFTG QWKRFVIDNK LKEGDICLFE LIGKKKEIRM NVYFWQPS

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence

MVDNCESCKK WREHYFWDHA KCIHFFKTMN GDFSKQMSIP EKLTSNFCKV VSQNIELKDP  60
IGNSWNVRIE ERDGALWFRN GWKEFVEAHC LEIGDVLMFK YNGKSCFDVL VMDGTGCEKV  120
SAYFIKKNNK KRNIGCVERD DNSVEIINTP FCSPTVIECD SSSSSEGVQC ELNHRANQSE  180
RNSSHKIDDV LLNKKRKPGR PCINSEAQVE LAMPRKFNLG NIIVSRKKHC TALEKKSLVQ  240
LVRSVRPKYP FFVSIMHLTH VSNRCFLTIP SGFVRRLPNT SQIILLQTPG GERSWAVNYL  300
VQKNITGFTG QWKRFVIDNK LKEGDICLFE LIGKKKEIRM NVYFWQPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	5e-44	B3 family protein

Link Out ? help Back to Top
Ensembl	Dr05981.1