PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr05938.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family bHLH
Protein Properties Length: 305aa    MW: 33735.2 Da    PI: 6.2596
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr05938.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.4e-10134182355
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++Y++sLq
  Dr05938.1 134 NSHSLAERVRREKISERMRLLQDLVPGC----NKLTGKAMMLDEIINYVQSLQ 182
                58*************************9....56699***************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    
MSSSIRREVS SDWDPLLAMD HNMNFIGSSG FPPFIAGVVN SSNDDGRNDQ VPSLSCFGLV  60
DSPEFPSVAD NVKGKKRKGF TDFGASHSRS PVIKTQKAEA EQQKIDEKKP KNDNADAKKE  120
DYIHVRAKRG QATNSHSLAE RVRREKISER MRLLQDLVPG CNKLTGKAMM LDEIINYVQS  180
LQRQVEFLSM KLAAVNPEVN FDVEQILSKD ILQSQDGGNS AALGFGQAMT IPHQQFHGLM  240
QTEMGICNMP NSGGILRLNN SEISQMAQIP TNVWDQDLQN LVPMGFIGNP PIESKEMNGS  300
MKAEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
175111KKRKGFTDFGASHSRSPVIKTQKAEAEQQKIDEKKPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.15e-61bHLH family protein