PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr05371.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family MYB_related
Protein Properties Length: 435aa    MW: 47234.8 Da    PI: 7.4531
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr05371.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.3e-164488147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT eE+ ++++a k++G   W++I +++g ++t+ q++s+ qk+
        Dr05371.1 44 REKWTDEEHNKFLEALKLYGRA-WRRIEEHIG-TKTAVQIRSHAQKF 88
                     789*****************88.*********.************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    
MKERSGLLNN QLSLDVQNLS TNDLQVANMA GVKIRKPYTM TKQREKWTDE EHNKFLEALK  60
LYGRAWRRIE EHIGTKTAVQ IRSHAQKFFT KLGRESACSD GATGSSIEIP PPRPKRKPIH  120
PYPRKLVNLP KKGVQVTTLV DWCISQAPSA SVSEQTNQSP TSVLSTTLCS DATGSSGSNS  180
PNACTSQQSP VSGTKSSNEP LNEEENGSPS AKLNAEVTSA MELDSSLQDA FPSKENSSEQ  240
TQGTSVKLFG KTVFVASSAV ECNNNTVLAD DLDSHQSSTC LRMENQEKPT VQTPWNPWSA  300
SMHPMFFISP YPAANLPPGS ATLPCPMWWS SNGGGSPIPL GRHPHTEACT DSDFSSPSEV  360
DDSQLAQPTY VSNSMLSPVL NLTLNSPLTS SPKASNGQTG RGFVPYKRCT AEKALHQPVI  420
IPYENKNGQS LQLCL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.16e-43MYB_related family protein