PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr05339.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

C2H2

Protein Properties

Length: 507aa MW: 55340.2 Da PI: 10.1024

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr05339.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	6	28	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H Dr05339.1 6 FVCEVCNKGFQREQNLQLHRRGH 28 89*******************88 PP
2	zf-C2H2	11.8	0.00072	83	105	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + Dr05339.1 83 WKCDKCSKRYAVQSDWKAHSKIC 105 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence
MATNRFVCEV CNKGFQREQN LQLHRRGHNL PWKLRQKSNK EVQRRKVYLC PEPTCVHHDP 60 SRALGDLTGI KKHFSRKHGE KKWKCDKCSK RYAVQSDWKA HSKICGTREY RCDCGTLFSR 120 RDSFITHRAF CDALAQESAR LPPSLYGSSN MGLSLSQMNS SATDILRNTG GGPPQFDHHQ 180 LITPSINPSA FRSPPPPPLF LGANQEFSQQ IHGLMHHSEL QSNTTGNSSS SNNLFSFSFL 240 SNTSNNNNNN NNTSSTMNSS INGGGGGGPS SLFAGNLMSD HHHHHHHQQQ QQQQQQQQQQ 300 QHLFNTSTAT MHNEPVLPQM SATALLQKAA QMGATSTSNA SSLLRGFATS SSNSSGVKAR 360 TSFINENNHD QSHNENERHL QDLMNSLTNE GAAMFGRFNS GRDTMTRDFL GVGSMVRGMA 420 AGGGGGGGGG GGIDMGSISM DSDIKGTDSP KALLNRQGRA QASMGAGTTR IQPPLTSPRN 480 VPSAENQTLT TQIGNQNTNR PFGRCQN

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence

MATNRFVCEV CNKGFQREQN LQLHRRGHNL PWKLRQKSNK EVQRRKVYLC PEPTCVHHDP  60
SRALGDLTGI KKHFSRKHGE KKWKCDKCSK RYAVQSDWKA HSKICGTREY RCDCGTLFSR  120
RDSFITHRAF CDALAQESAR LPPSLYGSSN MGLSLSQMNS SATDILRNTG GGPPQFDHHQ  180
LITPSINPSA FRSPPPPPLF LGANQEFSQQ IHGLMHHSEL QSNTTGNSSS SNNLFSFSFL  240
SNTSNNNNNN NNTSSTMNSS INGGGGGGPS SLFAGNLMSD HHHHHHHQQQ QQQQQQQQQQ  300
QHLFNTSTAT MHNEPVLPQM SATALLQKAA QMGATSTSNA SSLLRGFATS SSNSSGVKAR  360
TSFINENNHD QSHNENERHL QDLMNSLTNE GAAMFGRFNS GRDTMTRDFL GVGSMVRGMA  420
AGGGGGGGGG GGIDMGSISM DSDIKGTDSP KALLNRQGRA QASMGAGTTR IQPPLTSPRN  480
VPSAENQTLT TQIGNQNTNR PFGRCQN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-96	C2H2 family protein

Link Out ? help Back to Top
Ensembl	Dr05339.1