PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr05092.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB

Protein Properties

Length: 1142aa MW: 124256 Da PI: 5.0207

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr05092.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.6	2.2e-11	86	123	10	48
HHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 10 ellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +l +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l Dr05092.1 86 AILCKAVQRFKGKNWKKIAECFA-DRTDVQCLHRWQKVL 123 6899*****************.**********986 PP
2	Myb_DNA-binding	59.7	6.4e-19	129	175	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde++++ v+++G + W+tIa+ ++ gR +kqc++rw+++l Dr05092.1 129 KGPWSKEEDEKIIEMVNKFGAKKWSTIAQALP-GRIGKQCRERWHNHL 175 79****************************.***********97 PP
3	Myb_DNA-binding	48	2.9e-15	181	223	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r++WT+eE+ l++a++ +G++ W+ + ++ gRt++ +k++w+ Dr05092.1 181 RDAWTQEEEIALIRAHQIYGNK-WAELTKFLP-GRTDNAIKNHWN 223 789*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1142 aa Download sequence
MLDPNPCFDS TGNALTSSFQ LLEILGLDSA GNALAPAFLV WNLEIMELVG DKGKSAKKGE 60 ASSSAAPPDG SGNELQRQRP LHGYDAILCK AVQRFKGKNW KKIAECFADR TDVQCLHRWQ 120 KVLNPELVKG PWSKEEDEKI IEMVNKFGAK KWSTIAQALP GRIGKQCRER WHNHLNPAIN 180 RDAWTQEEEI ALIRAHQIYG NKWAELTKFL PGRTDNAIKN HWNSSVKKKL DSYLASGLLA 240 QFQGLPLVEN LPICVSSAGI NQQNSEDSVF KDGADIEESS DYTHGSVLVC SQSDCEVTNT 300 ALLCEGLRLG EDVNQRAMQD FQLSEYYASI EDFTCVIPET QSSQIIASNA IEQNSLHCIG 360 QSKSNVNQVG PEGLHNGSLQ ETAQTSPDAA RNLDCCAEQS VEHQGSQSTL LFDSADCSAD 420 RFLETEFQQD FTTGVPFTTS NQFLDCCTAS ANSQSVADCC EFGSILGSHP VTSSGMLGVS 480 YCQSLMSVIS PSYICPGDGN LAHRSDSFEL REVSVSNADS GFISCSYDSF AYSTCSGLSP 540 VGSSKSKVSV YMEQCPERRT PKSNNVLSVG STLPTVMGNA SLLNENANAI TTEIPDSGAL 600 FYEPPRFPSI DLPFVSCDLI SSGDLQQAYS PLGIRQLMMS SMNCSTPYNL WDSPSHDDSP 660 DAVLKNAAKS FICTPSIMKK RQRELLSPLQ EKRSDKKSGT DMNRTLFCAS SSSRSDFSST 720 DVRHNENATC RIPVNQVEAG AGPSDNKTKS SETLTKVEEN LDDGLKDTKD QIDSARSKIS 780 VRDTEVKMGQ CENVIGSLAK ADSDAKEKKH LLENLRLFCT CVVDHDSSPF LLQPAGILVE 840 HDVNDRQLLS ADQGGNPTKA QMDVVDVSSK RQNSKIKESM ENTRSNCDFL SNSSSVVLSS 900 VGEHRQDGCP IAAKTIHSVP SSEPRGVLVE KAAPSIELDL DNLNIFVDTP AIKRSLESPS 960 AWKSPWFMNP LLGGQRIDTD ITFEASNSAM GKYVLGLSLC LLASHAVDQS IIFTNHGALV 1020 QDLSYFMSPG DRSYDAYGLM RQLSEHTAAV VAEAHEILAS GKSKEDVSLC KLEEGNSSKE 1080 NSQTKEMVSH TLKPPNIKPE GRVLDFSGCT TTPGRGESSK TNSAGTALSI SSPSSYLLKR 1140 CR

Sequence ? help Back to Top

Protein Sequence Length: 1142 aa Download sequence

MLDPNPCFDS TGNALTSSFQ LLEILGLDSA GNALAPAFLV WNLEIMELVG DKGKSAKKGE  60
ASSSAAPPDG SGNELQRQRP LHGYDAILCK AVQRFKGKNW KKIAECFADR TDVQCLHRWQ  120
KVLNPELVKG PWSKEEDEKI IEMVNKFGAK KWSTIAQALP GRIGKQCRER WHNHLNPAIN  180
RDAWTQEEEI ALIRAHQIYG NKWAELTKFL PGRTDNAIKN HWNSSVKKKL DSYLASGLLA  240
QFQGLPLVEN LPICVSSAGI NQQNSEDSVF KDGADIEESS DYTHGSVLVC SQSDCEVTNT  300
ALLCEGLRLG EDVNQRAMQD FQLSEYYASI EDFTCVIPET QSSQIIASNA IEQNSLHCIG  360
QSKSNVNQVG PEGLHNGSLQ ETAQTSPDAA RNLDCCAEQS VEHQGSQSTL LFDSADCSAD  420
RFLETEFQQD FTTGVPFTTS NQFLDCCTAS ANSQSVADCC EFGSILGSHP VTSSGMLGVS  480
YCQSLMSVIS PSYICPGDGN LAHRSDSFEL REVSVSNADS GFISCSYDSF AYSTCSGLSP  540
VGSSKSKVSV YMEQCPERRT PKSNNVLSVG STLPTVMGNA SLLNENANAI TTEIPDSGAL  600
FYEPPRFPSI DLPFVSCDLI SSGDLQQAYS PLGIRQLMMS SMNCSTPYNL WDSPSHDDSP  660
DAVLKNAAKS FICTPSIMKK RQRELLSPLQ EKRSDKKSGT DMNRTLFCAS SSSRSDFSST  720
DVRHNENATC RIPVNQVEAG AGPSDNKTKS SETLTKVEEN LDDGLKDTKD QIDSARSKIS  780
VRDTEVKMGQ CENVIGSLAK ADSDAKEKKH LLENLRLFCT CVVDHDSSPF LLQPAGILVE  840
HDVNDRQLLS ADQGGNPTKA QMDVVDVSSK RQNSKIKESM ENTRSNCDFL SNSSSVVLSS  900
VGEHRQDGCP IAAKTIHSVP SSEPRGVLVE KAAPSIELDL DNLNIFVDTP AIKRSLESPS  960
AWKSPWFMNP LLGGQRIDTD ITFEASNSAM GKYVLGLSLC LLASHAVDQS IIFTNHGALV  1020
QDLSYFMSPG DRSYDAYGLM RQLSEHTAAV VAEAHEILAS GKSKEDVSLC KLEEGNSSKE  1080
NSQTKEMVSH TLKPPNIKPE GRVLDFSGCT TTPGRGESSK TNSAGTALSI SSPSSYLLKR  1140
CR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.2	1e-115	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr05092.1