PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr04676.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family ERF
Protein Properties Length: 213aa    MW: 24398.2 Da    PI: 4.9587
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr04676.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.88.6e-2183132255
        AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+W+AeIrd +     r  r +lg+f+tae+Aa+a++ a+ +++g
  Dr04676.1  83 KYRGVRQRP-WGKWAAEIRDpW-----RaVRKWLGTFDTAEDAARAYDLAAIQFRG 132
                8********.**********88.....77***********************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    
MTSLYSQDEE QAMIISSLVQ VICGDTSLAV TIPDFFHLRP CLTCGINGCL GCDLFLDTTS  60
SNVTAATDDQ KQQKRKRKEK KNKYRGVRQR PWGKWAAEIR DPWRAVRKWL GTFDTAEDAA  120
RAYDLAAIQF RGPRAKLNFP FPDQFNGNVV FDRTASANTS MSSCTGANSE EEFQYQRQYN  180
QQYEQQRNQK EELAVSFWDG LQDLVQLDEE EPL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17580RKRKEK
27683KRKEKKNK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.12e-23ERF family protein