PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr04551.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

C3H

Protein Properties

Length: 322aa MW: 36536.3 Da PI: 6.8263

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr04551.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.9	5.9e-12	180	205	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C +Gd+CkF+H+ Dr04551.1 180 YQPDICKDYKETGYCGFGDSCKFMHD 205 67789********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence
MSGSDDPVCN FFRKDLTNKR IRKRKINDDD DDDHGSEDQQ QQQPQSMEKA KKPLRDNKLY 60 FSSSNTDGAS GKDSSLFRFE SSNEIQVHHD SRATATLETE TDFSRDARAI RERVLKQADE 120 ALKGKSKGKG DEKVYKGIHG YTDYKAGFRR EQTVAGEKAG GAHGPLRASA HIRSSARFDY 180 QPDICKDYKE TGYCGFGDSC KFMHDRGDYK SGWQLEKEWE ESEKARKKGL AMGGGDGGDV 240 DADADDDDED DDELPFACYI CRQPFQDPVV TKCKHYFCEH CALKHHSRNK KCFVCNKPTL 300 GIFNTAHEIK KKIAEQKENF SH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	22	51	RKRKINDDDDDDHGSEDQQQQQPQSMEKAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01350.1	1e-146	C3H family protein

Link Out ? help Back to Top
Ensembl	Dr04551.1