PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr04395.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB

Protein Properties

Length: 291aa MW: 33418.6 Da PI: 4.5591

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr04395.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.2	3.9e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWT+eEde+l+++++ +G g+W++ ++ g+ R++k+c++rw +yl Dr04395.1 14 KGRWTQEEDEKLLKYIQDHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	53.7	4.9e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T+eE+e+++++++ +G++ W++Ia +++ gRt++++k++w+++l Dr04395.1 67 RGNITKEEEEIIIRLHASFGNR-WSLIAGYLP-GRTDNEIKNYWNSHL 112 7999****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence
MGRAPCCEKV GLKKGRWTQE EDEKLLKYIQ DHGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LKADVKRGNI TKEEEEIIIR LHASFGNRWS LIAGYLPGRT DNEIKNYWNS HLSRSISSYR 120 KFDNNDLFPM ASDIEKLSQL HKKKRGKVSR SAMQKNKTMF NKKSETEVVQ DEXESSGIWE 180 AMDEVMLQSL LDLGSQEEER SSNXEENVEN FLVFGDEGGV SESNGMDFEK FEGMEVVGSG 240 EEVSEEASYK VLDGGDELWQ WIWDGGDHGG LEINGYEDDE DFQSWLFSEF L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49330.1	9e-70	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr04395.1