PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr04125.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

Protein Properties

Length: 676aa MW: 76744.7 Da PI: 10.0403

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr04125.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	42.5	1.1e-13	39	122	10	98
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 + +++ +p ++++ +g +k ++ed++g +W+vkl+ ++s + +t GW++Fv ++ + +g+ vvFk++++ s+f + ++f Dr04125.1 39 NKSNCPTFIPPICIRTLEGL--LEKXCSIEDSNGHVWQVKLSLLNGS--MAFTHGWRDFVLDHSIAVGELVVFKYVNSgSKF--HAQIFG 122 56777778898888888655..456799***********777777..569*********************9865666..888886 PP
2	B3	37.7	3.6e-12	591	673	10	96
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 v++++rl +pkk + g +++ k ++l+d+s r W v + +++++ GWkeF+ an+++ gD++ F+l+++se l v++ Dr04125.1 591 VNSLRRLEMPKKLPFSLGRTPHNRKVIILKDPSMRLWPVLY--LEDM-KHIIS-GWKEFAAANKIRRGDICEFZLISESEYILQVRI 673 5566677777777666688889999**************..5554.45555.********************98777666665 PP

Sequence ? help Back to Top
Protein Sequence Length: 676 aa Download sequence
MLARKTTXGX GFSTGFRTMY RRRTVAKIGE NRLRISTPNK SNCPTFIPPI CIRTLEGLLE 60 KXCSIEDSNG HVWQVKLSLL NGSMAFTHGW RDFVLDHSIA VGELVVFKYV NSGSKFHAQI 120 FGTSGAERVK LIQPEKCHEE LNLDKTVRRS SVNNDSSIQD QEEKEKPEMA EHCSNCSKDD 180 RKRKSVKVET HDEEIHLNRM KIRKLAENDL LYLNESIKKD LEEKRACSVA LDNGFFSKNF 240 DGKVATECKS IPKKSQVCDD KFEPPNVRFS ATEYKPPMPP IDKDSRKNKE VHKTYSRDYR 300 KTVNNGIPKY SECGKVHVEK HAHKLKSYAV CSRYLGGVKT KIVKQERCPA PDIKPGSPQA 360 PINVETSKSD IKKVFPVQCS KVYQKTQLPS QKMIDKKVHT PERGAMRPIK SHKAAAACTE 420 AIGRNQNPSR GILNKYLLTE DGICHIVDDD SMTXPGVRRS TPVEFCMVDK KVXACQDGGA 480 IMPQQLAMGG SFRQDGHRNH MALTKKIQND HHTKSKLDHL GTSSKNLIVV PGKKKEHDLM 540 KGKEPNALQG DQGNMVIPSS RKKNCILKCE ELNSFDLHHP NSINTRFSFP VNSLRRLEMP 600 KKLPFSLGRT PHNRKVIILK DPSMRLWPVL YLEDMKHIIS GWKEFAAANK IRRGDICEFZ 660 LISESEYILQ VRITKK

Sequence ? help Back to Top

Protein Sequence Length: 676 aa Download sequence

MLARKTTXGX GFSTGFRTMY RRRTVAKIGE NRLRISTPNK SNCPTFIPPI CIRTLEGLLE  60
KXCSIEDSNG HVWQVKLSLL NGSMAFTHGW RDFVLDHSIA VGELVVFKYV NSGSKFHAQI  120
FGTSGAERVK LIQPEKCHEE LNLDKTVRRS SVNNDSSIQD QEEKEKPEMA EHCSNCSKDD  180
RKRKSVKVET HDEEIHLNRM KIRKLAENDL LYLNESIKKD LEEKRACSVA LDNGFFSKNF  240
DGKVATECKS IPKKSQVCDD KFEPPNVRFS ATEYKPPMPP IDKDSRKNKE VHKTYSRDYR  300
KTVNNGIPKY SECGKVHVEK HAHKLKSYAV CSRYLGGVKT KIVKQERCPA PDIKPGSPQA  360
PINVETSKSD IKKVFPVQCS KVYQKTQLPS QKMIDKKVHT PERGAMRPIK SHKAAAACTE  420
AIGRNQNPSR GILNKYLLTE DGICHIVDDD SMTXPGVRRS TPVEFCMVDK KVXACQDGGA  480
IMPQQLAMGG SFRQDGHRNH MALTKKIQND HHTKSKLDHL GTSSKNLIVV PGKKKEHDLM  540
KGKEPNALQG DQGNMVIPSS RKKNCILKCE ELNSFDLHHP NSINTRFSFP VNSLRRLEMP  600
KKLPFSLGRT PHNRKVIILK DPSMRLWPVL YLEDMKHIIS GWKEFAAANK IRRGDICEFZ  660
LISESEYILQ VRITKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66980.1	5e-09	B3 family protein

Link Out ? help Back to Top
Ensembl	Dr04125.1