PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dr04119.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
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Family | C3H | ||||||||
Protein Properties | Length: 237aa MW: 26653.4 Da PI: 8.0456 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.8 | 7.7e-08 | 15 | 34 | 8 | 27 |
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 +f+ G Ck+G CkFaH++ Dr04119.1 15 YFLMPGGCKFGKDCKFAHDQ 34 8999**************86 PP | |||||||
2 | zf-CCCH | 34.1 | 4.5e-11 | 55 | 78 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++C++++rtG Cky ++CkF+H+ Dr04119.1 55 ARECSYYMRTGGCKYANNCKFHHP 78 589********************9 PP | |||||||
3 | zf-CCCH | 31 | 4.4e-10 | 193 | 219 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Ck+ ++CkF+H++ Dr04119.1 193 PGQPECQHFMKTGSCKFKSSCKFHHPK 219 5789*********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence |
MAHEIHDNGR WIVQYFLMPG GCKFGKDCKF AHDQEMNEEG SVELNFLGLP VRPGARECSY 60 YMRTGGCKYA NNCKFHHPDP IAVGGREPRD HPSKYNQGHT PVVSQLPATS WPMQIGSNEP 120 VTFLNPSPHF MPGMILPPQG LHPTPEWNGF QAPVNPFYLQ PAPPPPHPEM FVQYAPPNPV 180 HQQVYIDEFP DRPGQPECQH FMKTGSCKFK SSCKFHHPKS RSVKASPSMV RPVSSVL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63260.1 | 1e-46 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | Dr04119.1 |