PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr03330.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

AP2

Protein Properties

Length: 307aa MW: 35310.8 Da PI: 7.5816

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr03330.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	40.4	7.3e-13	43	98	2	55
AP2 2 gykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +kGV++++++gr++A+++d ++n ++k+ + g ++ +e Aa+a++ a++k++g Dr03330.1 43 IFKGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEETAARAYDLAALKYWG 98 69****************99998898888888******************98 PP
2	AP2	48.8	1.7e-15	141	192	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++++grW+A+I + ++ +k+ +lg++ t+eeAa a++ a+ k++g Dr03330.1 141 SKYRGVARHHQNGRWEARIGRV-IG--NKYLYLGTYATEEEAAFAYDVAAIKYRG 192 89**************9884.22..4***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence
MDSLAKEKIS KRRSSECSNE ERLKVKRMGK RVARDSPTQR TSIFKGVTRH RWTGRYEAHL 60 WDKNCWNESQ NKKGRQGAYD DEETAARAYD LAALKYWGPQ TTLNFPLSAY EEELKEMEGQ 120 SREEYIGSLR RKSNGFSRGV SKYRGVARHH QNGRWEARIG RVIGNKYLYL GTYATEEEAA 180 FAYDVAAIKY RGINAVTNFD LSLYINNTEI PNPNPNPNPN PNTNPNPNYK DENSLAKQSF 240 HQSSEINEIL KSASSTTNHQ RSGCNFPDDI QTYFEFKNEE NYTGNDDDDD AIFGDIINSF 300 ISPILQW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79700.2	1e-87	AP2 family protein

Link Out ? help Back to Top
Ensembl	Dr03330.1