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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Dr03261.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
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| Family | SBP | ||||||||
| Protein Properties | Length: 332aa MW: 37302.3 Da PI: 9.2301 | ||||||||
| Description | SBP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | SBP | 130.9 | 4.4e-41 | 138 | 216 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
+Cq++gC adls ak+yhrrhkvCe+hska+vv+ + g++qrfCqqCsrfhelsefDe+krsCr+rLa+hn+rrrk+++
Dr03261.1 138 RCQADGCGADLSGAKHYHRRHKVCEFHSKAAVVIfAGGVQQRFCQQCSRFHELSEFDETKRSCRKRLADHNRRRRKPKP 216
6******************************99835679*************************************986 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 332 aa Download sequence |
MMNNNRTNSL DSYIHQPPFM PFSSPETSSQ KHHHMWNLEP QSSQTLNTTH HQNQHLYFNN 60 SQLLDCTPPL LPMANTVPFY TPPMPSYRED HEVVGVGSQI GLNLGHRTYF SSGDALALGR 120 LWGRSRAGYA FGHHPPPRCQ ADGCGADLSG AKHYHRRHKV CEFHSKAAVV IFAGGVQQRF 180 CQQCSRFHEL SEFDETKRSC RKRLADHNRR RRKPKPQTTN TSSSSSLNDN LQDKSKPSSK 240 PTRDSSSTSK SSSKTSLDFE AQQSYHLSNN SPALSLGGVG RVNQFNHGSM LSISDEKESH 300 FSNGFFPNQS ISEASTINHL HLGQTMFNMD FI |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 197 | 214 | KRSCRKRLADHNRRRRKP |
| 2 | 209 | 236 | RRRRKPKPQTTNTSSSSSLNDNLQDKSK |
| 3 | 210 | 237 | RRRRKPKPQTTNTSSSSSLNDNLQDKSK |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT1G02065.1 | 3e-49 | SBP family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | Dr03261.1 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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