PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr01775.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

bHLH

Protein Properties

Length: 571aa MW: 64118.8 Da PI: 4.6376

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr01775.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.9	3.8e-13	378	425	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++h ErrRR+++N++f Lr+l+P+ + K +Ka+iL ++eY+k+L+ Dr01775.1 378 ANHMLSERRRREKLNEKFIILRSLVPSiS------KFDKASILGDTIEYLKELE 425 578899*******************66......**************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 571 aa Download sequence
MDVGFECQED EIQGNFRKQL AAVVKTLQWC YAIFWAHSSC QKGLLVWSDG YYNGDIKTRK 60 TTQPMELQAD QLGIQRSEQL RELYESLSAG ESSPPARRPS ASLSPEDLTD TEWYYLVCMS 120 FTFTSDDGIP GKILDDNQPI WLNNAQFADS QTFSRSLLAK SASIQTVVCF PFMDGILELG 180 STEMVPKDPD LAQQIITSFW QFTNPVISEQ SISSPQLDDN LVDADFDHDD VDTRALEYPD 240 VSECLTPNNQ NELRTSSLSD SIDEYLQNQD IENQHLMDNE CSNADCICIP VDFTTNGTHY 300 TKTLAAILGN PKQQEGITSS LHVNVPKSTF KIWRGASTSQ ATLSAIPQKM LKKIIVNVTW 360 NSGLQNGIHQ TEGDDASANH MLSERRRREK LNEKFIILRS LVPSISKFDK ASILGDTIEY 420 LKELERRVEE LESSRELMDA EARERPKHPD VSERTSDNYG AHNASKKRKA CIVDEPETEQ 480 HHWVLSKDGP VDVNVTLMQK DVVIEMHCPW RDSLLFDIIE AMNNLDLDSH SLQSNTEDGI 540 LAMTAKAKIK GTVSASAGTI RKALHKVLAK S

Sequence ? help Back to Top

Protein Sequence Length: 571 aa Download sequence

MDVGFECQED EIQGNFRKQL AAVVKTLQWC YAIFWAHSSC QKGLLVWSDG YYNGDIKTRK  60
TTQPMELQAD QLGIQRSEQL RELYESLSAG ESSPPARRPS ASLSPEDLTD TEWYYLVCMS  120
FTFTSDDGIP GKILDDNQPI WLNNAQFADS QTFSRSLLAK SASIQTVVCF PFMDGILELG  180
STEMVPKDPD LAQQIITSFW QFTNPVISEQ SISSPQLDDN LVDADFDHDD VDTRALEYPD  240
VSECLTPNNQ NELRTSSLSD SIDEYLQNQD IENQHLMDNE CSNADCICIP VDFTTNGTHY  300
TKTLAAILGN PKQQEGITSS LHVNVPKSTF KIWRGASTSQ ATLSAIPQKM LKKIIVNVTW  360
NSGLQNGIHQ TEGDDASANH MLSERRRREK LNEKFIILRS LVPSISKFDK ASILGDTIEY  420
LKELERRVEE LESSRELMDA EARERPKHPD VSERTSDNYG AHNASKKRKA CIVDEPETEQ  480
HHWVLSKDGP VDVNVTLMQK DVVIEMHCPW RDSLLFDIIE AMNNLDLDSH SLQSNTEDGI  540
LAMTAKAKIK GTVSASAGTI RKALHKVLAK S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	384	389	ERRRRE
2	385	390	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	1e-109	bHLH family protein

Link Out ? help Back to Top
Ensembl	Dr01775.1