PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr01605.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family C3H
Protein Properties Length: 369aa    MW: 40621.8 Da    PI: 7.6998
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr01605.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.72.3e-09120140526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 C++f++ G Ck+Gd C FaHg
  Dr01605.1 120 ACPDFRK-GSCKRGDACEFAHG 140
                7******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    
MMMMMGEGRH TDPTVHAPPW NLFDDPTESV AFQLPVGNDP YLLGDATMAA LQRFLPSNED  60
GDELDAPVDA YSCDEFRMYE FKVRRCARGR SHDWTECPYA HPGEKARRRD PRKYHYSGTA  120
CPDFRKGSCK RGDACEFAHG VFECWLHPAR YRTQPCKDGT ACRRRVCFFA HTPEQLRVLP  180
QTQSPKAPVE SYDGSPLRHH ALDAYFTKNM FSSSPTSTLI SPPVSPPSDS PPMSPVVRRA  240
PVGASVNEVL ASLRQLQLSK AKSAPSSWGL QMGCGLGSPR SPAVRAGGGF SSLPATPTRS  300
SVGGSGWFDR WDGGHVDEPP MERVESGRAL RAKMFERLSK ESGMERPETG SPAPAMGTPD  360
VGWVSELVM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-124C3H family protein