PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr00460.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB_related

Protein Properties

Length: 908aa MW: 102963 Da PI: 7.8449

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr00460.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.3	5.6e-16	587	631	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWTteE++++++a ++G W++I +++ ++t+ q++s+ qk+ Dr00460.1 587 RERWTTEEHQRFLEALSLHGRA-WRRIQEHIR-TKTAVQIRSHAQKF 631 78****************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 908 aa Download sequence
MDSRLLAARK CLVACKTLTQ VLPCSSNHWR WERSFHLQSP SPPSCSQNPS SSSLCVMIRS 60 RNPPKYCSRF LSSFSQKFRR TPGRQSISAG IDREEVSEIV ELIGRDVADA ESKLNGMRLR 120 LSDALVSEIL RISSARRIPV LRFFIWVFKS HPDFKPSAAM YNQIVDNLGR LGDYGTMDVL 180 LNELSSNGHC LTEKAFAFLQ ERGDFDVKES TGRVIEILNR VGRSCRGSGI YSLIKLFCLS 240 RSFDLAMFVM EETSKCTSYY NLLIAAKCRY GSFQDVHNMF DEMRRFGCEP STSSYNYLLG 300 SLFKNKRFVE GCELLQRMEE FGYCPNPLTF EVIAFHACKD NRMDVAMEFL NRMLVEGIKP 360 RYAMHAAFIK GYFLSERVED AYNYVVDMSV RDQCSSNMNY SLLASLFRMS GKVVEAARVL 420 HEMMEKGLKP NFSIYIKVVR DLPELACMNQ TVDVERRTKL WTFSSLFLIS VMIIVIQQIT 480 SANMICMEMI LVTEVLLICL LTVAMIFVHY MKMVDHSWKY FVLEAMTILH ERSSRICNQK 540 VGSSIRQTCL SLTTFRILKS DKMSGEEGSS SILDLRERKP YTITRPRERW TTEEHQRFLE 600 ALSLHGRAWR RIQEHIRTKT AVQIRSHAQK FFSKVVKESA SGGDGSLKLI DIPPPRPKKK 660 PMHPYPRKSH SIQERTILEP LQTSSSPISL ACGPDNQSPT SVLSDTIGMQ VSSAHEQEDG 720 DQDTTGLDAQ KCPVELDVSP DHAATSKECS SVETQVVSLR LFGRTVLVTE SHGTTSSNFG 780 DKTKHQSASK DLQNQISVPS EALDHGDCHG DQMKIEWSYW PASFPSMLYS LPHGNTKIPM 840 PWFMYPLNFP FPFSHHQNII SCEQAGQEEC SNTGSNTSSD TEMETHDKEE AATHGIDATT 900 TGFVPYKS

Sequence ? help Back to Top

Protein Sequence Length: 908 aa Download sequence

MDSRLLAARK CLVACKTLTQ VLPCSSNHWR WERSFHLQSP SPPSCSQNPS SSSLCVMIRS  60
RNPPKYCSRF LSSFSQKFRR TPGRQSISAG IDREEVSEIV ELIGRDVADA ESKLNGMRLR  120
LSDALVSEIL RISSARRIPV LRFFIWVFKS HPDFKPSAAM YNQIVDNLGR LGDYGTMDVL  180
LNELSSNGHC LTEKAFAFLQ ERGDFDVKES TGRVIEILNR VGRSCRGSGI YSLIKLFCLS  240
RSFDLAMFVM EETSKCTSYY NLLIAAKCRY GSFQDVHNMF DEMRRFGCEP STSSYNYLLG  300
SLFKNKRFVE GCELLQRMEE FGYCPNPLTF EVIAFHACKD NRMDVAMEFL NRMLVEGIKP  360
RYAMHAAFIK GYFLSERVED AYNYVVDMSV RDQCSSNMNY SLLASLFRMS GKVVEAARVL  420
HEMMEKGLKP NFSIYIKVVR DLPELACMNQ TVDVERRTKL WTFSSLFLIS VMIIVIQQIT  480
SANMICMEMI LVTEVLLICL LTVAMIFVHY MKMVDHSWKY FVLEAMTILH ERSSRICNQK  540
VGSSIRQTCL SLTTFRILKS DKMSGEEGSS SILDLRERKP YTITRPRERW TTEEHQRFLE  600
ALSLHGRAWR RIQEHIRTKT AVQIRSHAQK FFSKVVKESA SGGDGSLKLI DIPPPRPKKK  660
PMHPYPRKSH SIQERTILEP LQTSSSPISL ACGPDNQSPT SVLSDTIGMQ VSSAHEQEDG  720
DQDTTGLDAQ KCPVELDVSP DHAATSKECS SVETQVVSLR LFGRTVLVTE SHGTTSSNFG  780
DKTKHQSASK DLQNQISVPS EALDHGDCHG DQMKIEWSYW PASFPSMLYS LPHGNTKIPM  840
PWFMYPLNFP FPFSHHQNII SCEQAGQEEC SNTGSNTSSD TEMETHDKEE AATHGIDATT  900
TGFVPYKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	5e-34	MYB_related family protein

Link Out ? help Back to Top
Ensembl	Dr00460.1