PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr00432.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family C3H
Protein Properties Length: 424aa    MW: 46397.8 Da    PI: 7.65
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr00432.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.13.1e-08101121526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C+ ++ +G C+yG+rC+F H+
  Dr00432.1 101 ICK-YFISGNCNYGERCRFLHS 121
                799.8888*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    
MDIEAGDRYG NKRIHQRIGG SNPSSISERS NNKVCHHWRA GRCNRHPCPF LHAEPSIDSL  60
PKRHQPAVEH HSLVWKNPGT NPGPPSKWGK ARAPQKAPDK ICKYFISGNC NYGERCRFLH  120
SWFVGDSFSL LTPLQGHQKV ITGIALPAGS DKLYSGSKDE SVRVWDCQTG QCVGVINLGG  180
EIGCMISEGP WIFVGIPNAV KAWNTQTATD LSLSGPTGQV YALVVGNEML FAGIQDGHIL  240
AWKFSAVGNC FEPAASLSGH RLGVVSLVVG AMRLYSGSMD NTIRVWDLVT LQCIQTLTDH  300
TSVVMSVLCW DQFLLSCSLD RTIKVWVATE TGSLEVTYTH NEEQGLLALG GMHDAQAKPV  360
LLCSCNDNVV RLYDLPSFTE RGKIFSKDEV RAMQVGPGGL FFTGDGTGEV KVWKWSANET  420
QSVN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0C3H family protein