PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr00346.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

WRKY

Protein Properties

Length: 1185aa MW: 131517 Da PI: 6.5087

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr00346.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.2	9.3e-30	247	303	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK+vkg efprsYY+Ct+++C++kk++ers+ d++++e++Y+g+H+h Dr00346.1 247 NDGYNWRKYGQKHVKGCEFPRSYYKCTHPNCQMKKQLERSH-DGQITEVIYKGHHDHL 303 8**************************************.*************5 PP
2	WRKY	105	3.8e-33	423	481	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct gCpv+k+ver+++dpk+v++tYeg+Hnh+ Dr00346.1 423 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNVGCPVRKHVERASHDPKAVITTYEGKHNHD 481 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 1185 aa Download sequence
MLDNSLPASG EIAHQALESN SPFPELQFDG FGARSDDASI EKTRGSATRV VEISGARYKS 60 MSPAKLPISR SLHLTIPSGF SPSVLLESPV LLTNIKAEPS PTTSTFSMPF MVKGVANSSL 120 SPPGEQSNST HGDGHSGSFE FQLNIQSGLS SLAPLASAGS RRQEYDTCGQ VLRQSVVQLL 180 ECSQSVKAEG CAFSAHELTL TVAETRPPAE AACSNLQEAV GSDHGLTLLQ LDNKGSSVSA 240 VPEKLSNDGY NWRKYGQKHV KGCEFPRSYY KCTHPNCQMK KQLERSHDGQ ITEVIYKGHH 300 DHLKPQPSHR VAIGAILAGY GEEKTEGFSS LVNAEDKLLN ANGQGSRHAD PNGNPELSPV 360 LVSDDDANGG GRLNNTGDEG ADGDDPESKR RKQDTNVTDS MQIGKVNREP RVVVQTVSEV 420 DILDDGYRWR KYGQKVVKGN PNPRSYYKCT NVGCPVRKHV ERASHDPKAV ITTYEGKHNH 480 DVPVSRNSSH DTIVAPAEDG ANTLNGCMAL ALNGMLRTCD IKSIGHHYNQ SDEMDTISLD 540 LSVGISPRHG SSKENQQTLQ PEHAESHQLQ IPQVDQKDFS TTSFNAIFYH SLHGSRENNG 600 DGFTFSAPIN HPPNQYYSKA GNLARMEVPE CTKIMLNRLQ KLEPEMATKI MGYLLLNLSE 660 RQMIECALGP DKQILALINK AKEYLASSPK QVASSPLQSQ FDHPYPMNYL PTSPTISRPF 720 SSPTSFRVAA PSPVWDAHLA PEQQQQQQQM MPTYNLNHSP PFNDMFGDDM GLHDQAEFFG 780 SEEKFNSLHR MSPEFSGNYL YQDAARRTGL RSPPACNYFY RGYCRHGINC RYYHGHAGPD 840 NFSLMYASDA HELANDDHVF PPGSLEKLEL EIRQLLKARS GIPVSIASLP MLYQEKYGRP 900 LQADGYLTES QRHGKTGFSL TKLLARLKNS ICLIDRPHGQ HSVVLVEDVP KYADYRNDRI 960 DFLQVAASSC QIYLTFPADS TFTEEDVMNY FNEFGPVRDV RIPRQEKRMF GFVSFLYPET 1020 VRLVLDKGPP HFICGSRVLA KPYKEKPKLS DRKFAERIEH PIYQPALFLE MDPDINTMSV 1080 PRFLDNSRFL PNHFAEDPEL ALELESRRLL ELQLTPKTPK PVTQFPYLGH QTQESSAPKD 1140 NFASQLVPSS GSPSDDKAHL LSINNLSDHD GDHIELPESP FAASH

Sequence ? help Back to Top

Protein Sequence Length: 1185 aa Download sequence

MLDNSLPASG EIAHQALESN SPFPELQFDG FGARSDDASI EKTRGSATRV VEISGARYKS  60
MSPAKLPISR SLHLTIPSGF SPSVLLESPV LLTNIKAEPS PTTSTFSMPF MVKGVANSSL  120
SPPGEQSNST HGDGHSGSFE FQLNIQSGLS SLAPLASAGS RRQEYDTCGQ VLRQSVVQLL  180
ECSQSVKAEG CAFSAHELTL TVAETRPPAE AACSNLQEAV GSDHGLTLLQ LDNKGSSVSA  240
VPEKLSNDGY NWRKYGQKHV KGCEFPRSYY KCTHPNCQMK KQLERSHDGQ ITEVIYKGHH  300
DHLKPQPSHR VAIGAILAGY GEEKTEGFSS LVNAEDKLLN ANGQGSRHAD PNGNPELSPV  360
LVSDDDANGG GRLNNTGDEG ADGDDPESKR RKQDTNVTDS MQIGKVNREP RVVVQTVSEV  420
DILDDGYRWR KYGQKVVKGN PNPRSYYKCT NVGCPVRKHV ERASHDPKAV ITTYEGKHNH  480
DVPVSRNSSH DTIVAPAEDG ANTLNGCMAL ALNGMLRTCD IKSIGHHYNQ SDEMDTISLD  540
LSVGISPRHG SSKENQQTLQ PEHAESHQLQ IPQVDQKDFS TTSFNAIFYH SLHGSRENNG  600
DGFTFSAPIN HPPNQYYSKA GNLARMEVPE CTKIMLNRLQ KLEPEMATKI MGYLLLNLSE  660
RQMIECALGP DKQILALINK AKEYLASSPK QVASSPLQSQ FDHPYPMNYL PTSPTISRPF  720
SSPTSFRVAA PSPVWDAHLA PEQQQQQQQM MPTYNLNHSP PFNDMFGDDM GLHDQAEFFG  780
SEEKFNSLHR MSPEFSGNYL YQDAARRTGL RSPPACNYFY RGYCRHGINC RYYHGHAGPD  840
NFSLMYASDA HELANDDHVF PPGSLEKLEL EIRQLLKARS GIPVSIASLP MLYQEKYGRP  900
LQADGYLTES QRHGKTGFSL TKLLARLKNS ICLIDRPHGQ HSVVLVEDVP KYADYRNDRI  960
DFLQVAASSC QIYLTFPADS TFTEEDVMNY FNEFGPVRDV RIPRQEKRMF GFVSFLYPET  1020
VRLVLDKGPP HFICGSRVLA KPYKEKPKLS DRKFAERIEH PIYQPALFLE MDPDINTMSV  1080
PRFLDNSRFL PNHFAEDPEL ALELESRRLL ELQLTPKTPK PVTQFPYLGH QTQESSAPKD  1140
NFASQLVPSS GSPSDDKAHL LSINNLSDHD GDHIELPESP FAASH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26640.2	1e-110	WRKY family protein

Link Out ? help Back to Top
Ensembl	Dr00346.1