PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr00070.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB_related

Protein Properties

Length: 841aa MW: 89329.8 Da PI: 8.6085

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr00070.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.2	2.4e-10	418	464	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqk 46 r+ WT+eEd l+ av+++G g+W+tI + Rt+ q+ rw + Dr00070.1 418 RKTWTKEEDMELIAAVQKYGEGNWATILKGDFkHDRTASQLSQRWST 464 789************************98433478888888888865 PP

Sequence ? help Back to Top
Protein Sequence Length: 841 aa Download sequence
MLPHHQLHRR LSYTTDPDRA ALSFSAVPPI KAGTPLSVPS LSLSLLSRSP FSWFPATTSP 60 AHFAVKEVDV GLVANLGTLQ RLPKIVGFGN AMDLALTAKA MGLVSRVFAD PAKMDEGIFA 120 LAKELAAKPA LTLMGTKAVI MKSRDMAVEN GLDYVATWNA GMLRSRGLEE AVLSKLQKRK 180 PNFSKMQARF DLSIEVRRDF SSANLSDFGV FSKETMLGTK KKKGSISEED TSLLLQRYSA 240 TTILSLLQEV SQFASVKIDW KALVQKSSTG ISSAREYQML WRHLAYRDSL LEKVEDGAEP 300 LDDDSDLEFE VEAVPAVSSE ASSEASACVK VLISSCTSND HGQSNRSTLE APLMINIPNG 360 QVSSVTSDEQ QQPHTNRGMN IAVPVSIQKQ PQPPGSSTEV LDGNVSAGGS GLPPKKKRKT 420 WTKEEDMELI AAVQKYGEGN WATILKGDFK HDRTASQLSQ RWSTIRRRQT NLTAGSVNNP 480 SGGNQSEAVL ATRNAVSMAL NMPSFGSLSA LCSGATQSSI PSGTAATPSV PPESAPVSAP 540 QTVNQPQPAA NQVTVTSQKA PSASSTRSRA TKKSSAPGKP AVGMPKNSMI QAAAFAAGGR 600 IATPSTAASL FRAALSKNAV HFRPGTTSLP KSSVKSTKPS SATNTSGSQP VSLHSSKPSV 660 MPPPPSGPRV PSQQTQESSG KVTTQTPPTN CATTTDASAQ QLATEPNSAG VSNCXSAPER 720 TMKKNGNEIP MTNVVDLDEA TTQDHQPTLA AGDIDSRKCT EAGNNQATVD MQVDTXNCEA 780 GNKAEPVDTK PEMSENQTKV NDSNLSCSKT DMDIDGTVNP HSDCVIVTDN KTKETNDQNK 840 Q

Sequence ? help Back to Top

Protein Sequence Length: 841 aa Download sequence

MLPHHQLHRR LSYTTDPDRA ALSFSAVPPI KAGTPLSVPS LSLSLLSRSP FSWFPATTSP  60
AHFAVKEVDV GLVANLGTLQ RLPKIVGFGN AMDLALTAKA MGLVSRVFAD PAKMDEGIFA  120
LAKELAAKPA LTLMGTKAVI MKSRDMAVEN GLDYVATWNA GMLRSRGLEE AVLSKLQKRK  180
PNFSKMQARF DLSIEVRRDF SSANLSDFGV FSKETMLGTK KKKGSISEED TSLLLQRYSA  240
TTILSLLQEV SQFASVKIDW KALVQKSSTG ISSAREYQML WRHLAYRDSL LEKVEDGAEP  300
LDDDSDLEFE VEAVPAVSSE ASSEASACVK VLISSCTSND HGQSNRSTLE APLMINIPNG  360
QVSSVTSDEQ QQPHTNRGMN IAVPVSIQKQ PQPPGSSTEV LDGNVSAGGS GLPPKKKRKT  420
WTKEEDMELI AAVQKYGEGN WATILKGDFK HDRTASQLSQ RWSTIRRRQT NLTAGSVNNP  480
SGGNQSEAVL ATRNAVSMAL NMPSFGSLSA LCSGATQSSI PSGTAATPSV PPESAPVSAP  540
QTVNQPQPAA NQVTVTSQKA PSASSTRSRA TKKSSAPGKP AVGMPKNSMI QAAAFAAGGR  600
IATPSTAASL FRAALSKNAV HFRPGTTSLP KSSVKSTKPS SATNTSGSQP VSLHSSKPSV  660
MPPPPSGPRV PSQQTQESSG KVTTQTPPTN CATTTDASAQ QLATEPNSAG VSNCXSAPER  720
TMKKNGNEIP MTNVVDLDEA TTQDHQPTLA AGDIDSRKCT EAGNNQATVD MQVDTXNCEA  780
GNKAEPVDTK PEMSENQTKV NDSNLSCSKT DMDIDGTVNP HSDCVIVTDN KTKETNDQNK  840
Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	2e-64	MYB_related family protein

Link Out ? help Back to Top
Ensembl	Dr00070.1