PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028556912.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

SBP

Protein Properties

Length: 523aa MW: 58105.4 Da PI: 9.1124

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028556912.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	124.1	5.8e-39	225	301	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC+ dl+ ak+yhr+h+vCe hsk+p v+v+g+e+rfCqqCsrfh+l efD++krsCrrrL++hn+rrrk+q+ XP_028556912.1 225 CQVEGCSIDLTAAKDYHRKHRVCERHSKSPRVIVAGHERRFCQQCSRFHDLCEFDQKKRSCRRRLSDHNARRRKAQP 301 **************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 523 aa Download sequence
MCFLSAELGK VGTRVLLALP RFGWGQSPAG KKRKKQGRGC TSSSFFSICC GMEWNFKNPL 60 QWDWENLGLF SGKESEVSKS TELSEWRAEG GAISNGSMYS SGSGTCSGSE LGNGSLKKTV 120 TASVGFLSKE GSKTSEVNLE AAQGIIKNQF KNYEMAQGED FRTSPVIVRC VGTGEPPIGL 180 KLGKRTYFEN LGSANIKTSS VSMTPPAASV RRSRASHQAI QHAYCQVEGC SIDLTAAKDY 240 HRKHRVCERH SKSPRVIVAG HERRFCQQCS RFHDLCEFDQ KKRSCRRRLS DHNARRRKAQ 300 PETISFNPST LPSLFYDERQ QMSFFLNLAP FSHVRPSTSS MLDQSDGFSL SMRKGSWLKT 360 IKADVDRQLQ FPEMDFSNKI KPSRDGLNRL IPFKCTTNEV LNQGEEAYVP TSNLNGAPDL 420 RRALSLLSSD AWCPSSTEQS SMIQLAITNP ITTSNLRVPT ANLAPECWQN DNSLAEQALP 480 FNLHGNGSHI QDLQLSKAPY ESSFFESNQA FSKSDGHFTE FKT

Sequence ? help Back to Top

Protein Sequence Length: 523 aa Download sequence

MCFLSAELGK VGTRVLLALP RFGWGQSPAG KKRKKQGRGC TSSSFFSICC GMEWNFKNPL  60
QWDWENLGLF SGKESEVSKS TELSEWRAEG GAISNGSMYS SGSGTCSGSE LGNGSLKKTV  120
TASVGFLSKE GSKTSEVNLE AAQGIIKNQF KNYEMAQGED FRTSPVIVRC VGTGEPPIGL  180
KLGKRTYFEN LGSANIKTSS VSMTPPAASV RRSRASHQAI QHAYCQVEGC SIDLTAAKDY  240
HRKHRVCERH SKSPRVIVAG HERRFCQQCS RFHDLCEFDQ KKRSCRRRLS DHNARRRKAQ  300
PETISFNPST LPSLFYDERQ QMSFFLNLAP FSHVRPSTSS MLDQSDGFSL SMRKGSWLKT  360
IKADVDRQLQ FPEMDFSNKI KPSRDGLNRL IPFKCTTNEV LNQGEEAYVP TSNLNGAPDL  420
RRALSLLSSD AWCPSSTEQS SMIQLAITNP ITTSNLRVPT ANLAPECWQN DNSLAEQALP  480
FNLHGNGSHI QDLQLSKAPY ESSFFESNQA FSKSDGHFTE FKT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	31	35	KKRKK
2	281	298	KKRSCRRRLSDHNARRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	1e-57	SBP family protein