PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028556621.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 822aa MW: 94092.7 Da PI: 7.9966

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028556621.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56.1	1.2e-17	74	157	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA +vGF v ++ks s ++g++ + + Cs+ g+ + + + r + +t+C+a++ v++ +dg ++ + +leHnH+++ XP_028556621.1 74 NFYKQYALRVGFGVIVKKSWFS-KSGKCRRVLLGCSRAGSGRADACY-----QARLTAKTNCQAMIGVRRLDDGLLHIVEANLEHNHPVS 157 6******************9.6777************9999.....999******************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 822 aa Download sequence
MVSGSLMEPP LDVSAEIDRV KEVEMNGIVA LHNGVPQDML TDSSKKDEIK EIISDGDKVP 60 NVGMTFKTYD EVSNFYKQYA LRVGFGVIVK KSWFSKSGKC RRVLLGCSRA GSGRADACYQ 120 ARLTAKTNCQ AMIGVRRLDD GLLHIVEANL EHNHPVSPST AQSLRCYQKM ACEINLIHSA 180 GNRSSHIVEK GIGNALEFGM LKLGEGDDVA IHQFFARMQN RNPNFFYSVH LEHHGRMKNL 240 FWADARSRAA SSYFCDVVSF DSTCLTVKYD LPLVSFIGTN HHGQTVLLGC GLLSNETVET 300 YIWLFKTWLA CIMGSQPNAF ISDHCKAIQL AVAEVFPRTR HRLCLDNIMK KIPEKLKGYA 360 EFIEIRKTLK KLVYDCSRID EFEEKWNKMI EGFRLEGNEW LNALYENRHS WVPLYLKDTF 420 WAGMSVSKRG ESLSSYFDGF VNPKTTVKQF LSKYETIIQS KCKKEAQADS ESLYKVPLIA 480 SKFYMEEQLS KMYTLNMFKK FQEELKATMY CHASPIKIDG PIHIFEIKEC SYMENGKRTE 540 SKDHEVCYNS DELAVHCVCG FFQFNGILCR HSLAVFKLQQ VFEIPSPYVL DRWKKDFKRL 600 YRLARYSDDI IPNTPVERYE YLSVRLLQLV ELGFVSEERY QLALKLIREL EKSLLDDPEG 660 RERQPRLLSF ESQTSQCVND LLSSQFAMSK NSKNPPSFPA KRRGRPPKKI KQSNLEILVQ 720 TNKEQDFLRP SLIGSENLVF QAASASSPLD VHVGSQGCID LMEDVNSNEL SFSTHFGVHA 780 NPQHHLGAQN LYEQQALENP PRVQWLYPQN YQEEARTIRR TG

Sequence ? help Back to Top

Protein Sequence Length: 822 aa Download sequence

MVSGSLMEPP LDVSAEIDRV KEVEMNGIVA LHNGVPQDML TDSSKKDEIK EIISDGDKVP  60
NVGMTFKTYD EVSNFYKQYA LRVGFGVIVK KSWFSKSGKC RRVLLGCSRA GSGRADACYQ  120
ARLTAKTNCQ AMIGVRRLDD GLLHIVEANL EHNHPVSPST AQSLRCYQKM ACEINLIHSA  180
GNRSSHIVEK GIGNALEFGM LKLGEGDDVA IHQFFARMQN RNPNFFYSVH LEHHGRMKNL  240
FWADARSRAA SSYFCDVVSF DSTCLTVKYD LPLVSFIGTN HHGQTVLLGC GLLSNETVET  300
YIWLFKTWLA CIMGSQPNAF ISDHCKAIQL AVAEVFPRTR HRLCLDNIMK KIPEKLKGYA  360
EFIEIRKTLK KLVYDCSRID EFEEKWNKMI EGFRLEGNEW LNALYENRHS WVPLYLKDTF  420
WAGMSVSKRG ESLSSYFDGF VNPKTTVKQF LSKYETIIQS KCKKEAQADS ESLYKVPLIA  480
SKFYMEEQLS KMYTLNMFKK FQEELKATMY CHASPIKIDG PIHIFEIKEC SYMENGKRTE  540
SKDHEVCYNS DELAVHCVCG FFQFNGILCR HSLAVFKLQQ VFEIPSPYVL DRWKKDFKRL  600
YRLARYSDDI IPNTPVERYE YLSVRLLQLV ELGFVSEERY QLALKLIREL EKSLLDDPEG  660
RERQPRLLSF ESQTSQCVND LLSSQFAMSK NSKNPPSFPA KRRGRPPKKI KQSNLEILVQ  720
TNKEQDFLRP SLIGSENLVF QAASASSPLD VHVGSQGCID LMEDVNSNEL SFSTHFGVHA  780
NPQHHLGAQN LYEQQALENP PRVQWLYPQN YQEEARTIRR TG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-149	FAR1 family protein