PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028556235.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 720aa MW: 82176.4 Da PI: 7.402

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028556235.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.6	1.6e-21	77	170	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y+++A++ GFsvr+++sk + ++ ++kr++vC + g + ++k++++k++r+r+ +r++C+a++++kk+ +w+v +++++HnHel+ XP_028556235.1 77 EYYSNFARNNGFSVRRERSKGNpEHPMGVYKRELVCHRAGPPLPRKTDDVKRQRNRKASRCKCEAQMVIKKNIsggVTRWVVFNFNNDHNHELM 170 69***************999767777***************************************98666789***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 720 aa Download sequence
MIKISSNGLV QRRSCPCGDD QCYIITEGEE GHSVFESMGS GDPNYLVGGS QICSEVATNI 60 LPPYVGQSFH SDEEALEYYS NFARNNGFSV RRERSKGNPE HPMGVYKREL VCHRAGPPLP 120 RKTDDVKRQR NRKASRCKCE AQMVIKKNIS GGVTRWVVFN FNNDHNHELM DSSEVRYPPH 180 RNILAVDRDQ ILALAKSGCT EPLILRALEM ERGPSAGQLA YGERDVKTFL QASKSINRES 240 DGSELLKTCR AMKEKNPDFR YDFLSDENNK LEHIAWSYAG SIRAFKLFGD VVVFDTTFHL 300 KAYDRPVGVW FGVDNYGHTI FFCCVILLDE RPESLAWSLQ AFIRLMDGKF PRTVLTDLNM 360 KLKDAILTNF PNVKNAFCIW HVISKLPSWF SALLGAEFDR FRIEFQRICD LETMEDFEDQ 420 WANMIMDFGL GEDKHVSLLY SNRFYWALPY LQGWFFGGLL TVGHSLSIQS FFKGFLHSQT 480 RLKDFIEQVG VAVDFQNQAG EEATTRESQH SVNLKTCMPI EEHASTILTR YAFDMFQKEI 540 MASAQYAVYE TAPENYLVRH HLKSDGGHFV SCVPSDEDLH CSCKGFETNG ILCRHALRVL 600 SLKNCFFIPD KYLLIRWRRE SSLFPKSSSN KYRSQALRSL ASIIIQESAL TKDRFDYVEW 660 HLSRLLSHVR DMPALDVAAS DVEQSSCFQD VVDIATAPSI SRGRPRKVKQ FVKPGKQSSS

Sequence ? help Back to Top

Protein Sequence Length: 720 aa Download sequence

MIKISSNGLV QRRSCPCGDD QCYIITEGEE GHSVFESMGS GDPNYLVGGS QICSEVATNI  60
LPPYVGQSFH SDEEALEYYS NFARNNGFSV RRERSKGNPE HPMGVYKREL VCHRAGPPLP  120
RKTDDVKRQR NRKASRCKCE AQMVIKKNIS GGVTRWVVFN FNNDHNHELM DSSEVRYPPH  180
RNILAVDRDQ ILALAKSGCT EPLILRALEM ERGPSAGQLA YGERDVKTFL QASKSINRES  240
DGSELLKTCR AMKEKNPDFR YDFLSDENNK LEHIAWSYAG SIRAFKLFGD VVVFDTTFHL  300
KAYDRPVGVW FGVDNYGHTI FFCCVILLDE RPESLAWSLQ AFIRLMDGKF PRTVLTDLNM  360
KLKDAILTNF PNVKNAFCIW HVISKLPSWF SALLGAEFDR FRIEFQRICD LETMEDFEDQ  420
WANMIMDFGL GEDKHVSLLY SNRFYWALPY LQGWFFGGLL TVGHSLSIQS FFKGFLHSQT  480
RLKDFIEQVG VAVDFQNQAG EEATTRESQH SVNLKTCMPI EEHASTILTR YAFDMFQKEI  540
MASAQYAVYE TAPENYLVRH HLKSDGGHFV SCVPSDEDLH CSCKGFETNG ILCRHALRVL  600
SLKNCFFIPD KYLLIRWRRE SSLFPKSSSN KYRSQALRSL ASIIIQESAL TKDRFDYVEW  660
HLSRLLSHVR DMPALDVAAS DVEQSSCFQD VVDIATAPSI SRGRPRKVKQ FVKPGKQSSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	127	132	KRQRNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1 family protein