PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028555866.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 873aa MW: 99815.6 Da PI: 6.9759

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028555866.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51.4	3.6e-16	112	194	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY+ YA +vGF v ++ks+ + + g + + +vC+k gk +e+ ++r++ +t+C+a+++vk++ dg ++++ + eHnH+ XP_028555866.1 112 SFYKLYALRVGFGVAVKKSSFT-TYGLCRRLVLVCTKGGKGRENACY-----QSRPTAKTDCRAMIVVKLWGDGLLHLMEAHVEHNHPT 194 5**************99998.7888************9999.....99*******************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 873 aa Download sequence
MADEPILEEE LAEENDVISE KGYAYSNKQL DKCGKIGDLS IGKHVSSKVI PANCINEGAT 60 DSKEVANLHD GDTGSDGKRD KIEMAMDDKV VAMDGRTPQV GMVFKSYEEV VSFYKLYALR 120 VGFGVAVKKS SFTTYGLCRR LVLVCTKGGK GRENACYQSR PTAKTDCRAM IVVKLWGDGL 180 LHLMEAHVEH NHPTNPSSAR FLKCYKKMSC RMTNMIARAS GHEGISLDDR ESLNFMDGGR 240 LKLEEGDNEA IHQFFARMQA KNPNFFYLMD LDTEGRLRNV FWADARSRAS YQHFGDVISF 300 DTSCLKYKFN IPLVLFLGTN HHGQSILLGC GFVAEQIVEN YTWLLKTWLT CMNGSVPNAV 360 ITDESEMIKE AISDVFPKAR HRICLWRMMK SVKEKLKEYA EHKTIKRALN RVVFESCQVD 420 EFEEKWSELI KGFGLKGDDL FNSLYELRSF WIPAFLKDTF WAGMSITHYK ERINSFFEGY 480 LYLETCLKEF LSKYEVSLQS KYETEAQADY ESLYNAGIFV SKYHMEEQLS KLYSLNIFKV 540 FQDELKGGLY CQVSLIKVDA SSSTYKVREC AFINEIEKAE NKDYDVLYIV DGFQVHCSCG 600 FFQFRGILCR HALSVLKLQQ VYDIPARYII DRWRKDFKQL NLISRKLKDG LNNSNSMERY 660 DNLSMRCLSL VDIGVMSDEK YQLALKLIRE VEKSLLDDNL FRDLQRKLLP FDNRLSESDE 720 NHASHEYGMY EESKNSPALP MKRRGRPPKK VKETSLETLP SSSKRKDNLG TSLIDNQNSF 780 LQASPNASQL GAQIRIPGGV NLEEVNPNEL SFGNHYGIHA TPPDIMSNHS TLQSANALQN 840 QFGQQNLGNQ QAVQWFYQPF FQEDQSPFGR RPG

Sequence ? help Back to Top

Protein Sequence Length: 873 aa Download sequence

MADEPILEEE LAEENDVISE KGYAYSNKQL DKCGKIGDLS IGKHVSSKVI PANCINEGAT  60
DSKEVANLHD GDTGSDGKRD KIEMAMDDKV VAMDGRTPQV GMVFKSYEEV VSFYKLYALR  120
VGFGVAVKKS SFTTYGLCRR LVLVCTKGGK GRENACYQSR PTAKTDCRAM IVVKLWGDGL  180
LHLMEAHVEH NHPTNPSSAR FLKCYKKMSC RMTNMIARAS GHEGISLDDR ESLNFMDGGR  240
LKLEEGDNEA IHQFFARMQA KNPNFFYLMD LDTEGRLRNV FWADARSRAS YQHFGDVISF  300
DTSCLKYKFN IPLVLFLGTN HHGQSILLGC GFVAEQIVEN YTWLLKTWLT CMNGSVPNAV  360
ITDESEMIKE AISDVFPKAR HRICLWRMMK SVKEKLKEYA EHKTIKRALN RVVFESCQVD  420
EFEEKWSELI KGFGLKGDDL FNSLYELRSF WIPAFLKDTF WAGMSITHYK ERINSFFEGY  480
LYLETCLKEF LSKYEVSLQS KYETEAQADY ESLYNAGIFV SKYHMEEQLS KLYSLNIFKV  540
FQDELKGGLY CQVSLIKVDA SSSTYKVREC AFINEIEKAE NKDYDVLYIV DGFQVHCSCG  600
FFQFRGILCR HALSVLKLQQ VYDIPARYII DRWRKDFKQL NLISRKLKDG LNNSNSMERY  660
DNLSMRCLSL VDIGVMSDEK YQLALKLIRE VEKSLLDDNL FRDLQRKLLP FDNRLSESDE  720
NHASHEYGMY EESKNSPALP MKRRGRPPKK VKETSLETLP SSSKRKDNLG TSLIDNQNSF  780
LQASPNASQL GAQIRIPGGV NLEEVNPNEL SFGNHYGIHA TPPDIMSNHS TLQSANALQN  840
QFGQQNLGNQ QAVQWFYQPF FQEDQSPFGR RPG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-133	FAR1 family protein