PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028555711.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

TALE

Protein Properties

Length: 582aa MW: 64924.1 Da PI: 5.8439

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028555711.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	26.8	8.8e-09	514	552	18	54
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +F++ ++yp+ +e++ LA k gLt +qV++WF N R + XP_028555711.1 514 MFQNflHPYPKDNEKQLLALKSGLTRSQVSNWFINARVR 552 5887779******************************88 PP
2	BELL	58.7	1.5e-19	388	455	4	72
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 ++ +k L+++l++Vd+r+ q+v+q+q +s+F+ ++ g ++ +++Al +iS +r+++ +i++qi XP_028555711.1 388 QNSTRKYELINMLQMVDQRFTQCVDQIQNAVSAFHSATATGC-HLPAQFALSTISSFYRAIRKKITGQI 455 67899**********************************9.899*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 582 aa Download sequence
MMENDFFNAS SSAADHSYMA AMDGFSSQMF SGSMFPSDVP DHGNCRQIMH TDSLYLTYQE 60 EGPNSELYAP NMSHITNASF NASIGNTNLR ENLMGTSLSA ASLADLLSTT TSLRDNHTTS 120 SFSLEDMKKV IPIESCISLN SSAKISVSSD FGPQDHTVFL ASQKGGGDSN GQRNYNMLNC 180 KLYDELSRNQ FPSTQTSSTV HPSYLVGSLE QGWISNRSTL SFDLSHGNEL SLSLGSSQPS 240 VFSLANGADQ CSEVSYSGMT QVMSRVGSSM DVNKMHNLPR DYQNSFTNRE KLSLCCGSSH 300 MPVHFSQMLS GSRYLLVIQE ILSELASYAT EDVEEVDDSL GDSVAEAKRS SSSCSIVNGF 360 TATGSNGLPF CSGENEQEQQ TDFQLQEQNS TRKYELINML QMVDQRFTQC VDQIQNAVSA 420 FHSATATGCH LPAQFALSTI SSFYRAIRKK ITGQIASFSQ ESSFEFMKEK ERSFETSFIQ 480 RQWALQQLKR TDQPSWRPQR GLPEKSVSVL RAWMFQNFLH PYPKDNEKQL LALKSGLTRS 540 QVSNWFINAR VRLWKPMIEE MYSEINRKNR AEEGSSSLHR NH

Sequence ? help Back to Top

Protein Sequence Length: 582 aa Download sequence

MMENDFFNAS SSAADHSYMA AMDGFSSQMF SGSMFPSDVP DHGNCRQIMH TDSLYLTYQE  60
EGPNSELYAP NMSHITNASF NASIGNTNLR ENLMGTSLSA ASLADLLSTT TSLRDNHTTS  120
SFSLEDMKKV IPIESCISLN SSAKISVSSD FGPQDHTVFL ASQKGGGDSN GQRNYNMLNC  180
KLYDELSRNQ FPSTQTSSTV HPSYLVGSLE QGWISNRSTL SFDLSHGNEL SLSLGSSQPS  240
VFSLANGADQ CSEVSYSGMT QVMSRVGSSM DVNKMHNLPR DYQNSFTNRE KLSLCCGSSH  300
MPVHFSQMLS GSRYLLVIQE ILSELASYAT EDVEEVDDSL GDSVAEAKRS SSSCSIVNGF  360
TATGSNGLPF CSGENEQEQQ TDFQLQEQNS TRKYELINML QMVDQRFTQC VDQIQNAVSA  420
FHSATATGCH LPAQFALSTI SSFYRAIRKK ITGQIASFSQ ESSFEFMKEK ERSFETSFIQ  480
RQWALQQLKR TDQPSWRPQR GLPEKSVSVL RAWMFQNFLH PYPKDNEKQL LALKSGLTRS  540
QVSNWFINAR VRLWKPMIEE MYSEINRKNR AEEGSSSLHR NH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32980.1	3e-78	TALE family protein