PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028555505.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GRAS
Protein Properties Length: 401aa    MW: 45872.7 Da    PI: 5.7555
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028555505.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS315.98.6e-97314002374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +lL ecA+a+ ++d  +++++L+ l+elasp+gd  q+la+yf++A   +l++s+++ yk+l + ++++++ +++ ++   f+evsP+ +f+h+
  XP_028555505.1  31 MHLLKECAKAIFEKDSVKIHHILWMLNELASPYGDCEQKLAFYFLQAFFYKLTESGESSYKTLVSAAEKSQSFDSARKVILKFQEVSPWTTFGHV 125
                     699************************************************************9999987777777677777************* PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.vakrledle 190
                     + N+aIlea+eg++++HiiD++ ++++QWp+Ll++La+R++++p+l++ +v+  +  +   ++e+g r++kfA+ +gvpfef+v+   +rl+dl+
  XP_028555505.1 126 ASNSAILEAFEGKSKLHIIDISNTYCTQWPTLLESLATRNDDTPHLKLSVVVT-DGARGSIMKEIGYRMQKFARLMGVPFEFKVIsFFSRLSDLD 219
                     ****************************************************9.5459999***********************97788****** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpreseeri 283
                      ++L vk++Ea+aVn++ +l +l      +e+ r+e++++v+sl+P vv+vve+ead    + +F++ f ++l++ys++f++le++++++s+er 
  XP_028555505.1 220 RDKLGVKEDEAVAVNCIGALRKLG-----VEE-RSEFIQMVRSLQPIVVTVVEEEADFssKEDEFFKCFEKCLKFYSMFFEMLEESFAPTSNERL 308
                     ***********************8.....444.78********************999534569******************************* PP

            GRAS 284 kvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaWr 374
                     ++Ere  +r+i +++ac  ++   er+e+  +W +rl ea F+p+ +se++ +++k+ll++++  g+++     e   l+++Wk++p+v++SaW+
  XP_028555505.1 309 VLERE-CSRSIIKLLACGRDDsESERREKGIQWCNRLLEA-FSPACFSEDTIDDVKALLKRYQ-AGWSLLpasGEASGLYMTWKQEPVVWASAWK 400
                     *****.89*********99885789************998.**********************.6666653335577788**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    
MPPTILHCLK MQNSSQFLQQ EDPNATKKWA MHLLKECAKA IFEKDSVKIH HILWMLNELA  60
SPYGDCEQKL AFYFLQAFFY KLTESGESSY KTLVSAAEKS QSFDSARKVI LKFQEVSPWT  120
TFGHVASNSA ILEAFEGKSK LHIIDISNTY CTQWPTLLES LATRNDDTPH LKLSVVVTDG  180
ARGSIMKEIG YRMQKFARLM GVPFEFKVIS FFSRLSDLDR DKLGVKEDEA VAVNCIGALR  240
KLGVEERSEF IQMVRSLQPI VVTVVEEEAD FSSKEDEFFK CFEKCLKFYS MFFEMLEESF  300
APTSNERLVL ERECSRSIIK LLACGRDDSE SERREKGIQW CNRLLEAFSP ACFSEDTIDD  360
VKALLKRYQA GWSLLPASGE ASGLYMTWKQ EPVVWASAWK L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-130GRAS family protein