PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028555352.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | MYB | ||||||||
Protein Properties | Length: 242aa MW: 28182.6 Da PI: 6.8008 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.6 | 6.9e-19 | 9 | 56 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +lv++v+++G ++W+ Ia+ g++Rt+k+c++rw++yl XP_028555352.1 9 KGPWTEQEDMQLVCYVHLFGERRWDFIAKVTGLNRTGKSCRLRWLNYL 56 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 56.3 | 7.5e-18 | 63 | 107 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 gr+T++E++l v+++ ++G++ W++Iar+++ gRt++++k++w++++ XP_028555352.1 63 GRMTPQEEQLVVELHSRWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 107 89*******************.*********.************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence |
MAASEEMRKG PWTEQEDMQL VCYVHLFGER RWDFIAKVTG LNRTGKSCRL RWLNYLHPGL 60 KHGRMTPQEE QLVVELHSRW GNRWSRIARR LPGRTDNEIK NYWRTHMRKK AQERQKSSQL 120 SPSSSSSSSS SLNSIAVAEA ENKWFEQINH GSSISTSGFE AEVELNGYSM DQIWNELAIS 180 ENPWLNFEAR KEKFNELEIT EMASPLWDYS ESQMWKVDDE NLKLFSPMAG LVIPNYQYGT 240 GI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 7e-74 | MYB family protein |