PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028555220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | MYB | ||||||||
Protein Properties | Length: 239aa MW: 27453.1 Da PI: 8.3629 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.3 | 2.2e-10 | 16 | 47 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 rg+WT eEd++l +++ ++G g+W++ a++ g XP_028555220.1 16 RGPWTVEEDLILTNYISKHGEGRWNSLAKCAG 47 89****************************99 PP | |||||||
2 | Myb_DNA-binding | 52 | 1.6e-16 | 105 | 148 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE+ l+++++ ++G++ W++Ia++++ gRt++++k++w++ XP_028555220.1 105 RGNITAEEQFLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 148 7999******************.*********.***********96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence |
METGKQKSSV EEELRRGPWT VEEDLILTNY ISKHGEGRWN SLAKCAGNVY LENLCIIYLS 60 TAASTLLSFS CMHLYIYINK RSGLKRTGKS CRLRWLNYLR PDVRRGNITA EEQFLILELH 120 SRWGNRWSKI AQHLPGRTDN EIKNYWRTRV QKHANQQWMP RLLERIRTAV DSSRAISNAH 180 TTLTSSNDNS KFSLPPVPGC CNDVVEEEGW PEFPTPSDEG SMLAGLWELS AMGSNMYVE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G48000.1 | 2e-61 | MYB family protein |