PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028555078.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 600aa MW: 65902 Da PI: 7.9485

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028555078.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	63.9	3.1e-20	59	105	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde l++av+++ g++WktIa+ ++ gRt+ qc +rwqk+l XP_028555078.1 59 KGGWTPEEDETLKHAVELHEGRSWKTIAKSVP-GRTDVQCLHRWQKVL 105 688***************************.**********986 PP
2	Myb_DNA-binding	52.2	1.4e-16	111	157	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEd ++++v+q+G+ W+ Iar ++ gR +kqc++rw+++l XP_028555078.1 111 KGSWAPEEDGTIIELVAQYGPTKWSVIARSLP-GRIGKQCRERWHNHL 157 799***************************.***********97 PP
3	Myb_DNA-binding	59.5	7.6e-19	163	206	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++W++eE+ +l +a+ ++G++ W+ Ia++++ gRt++++k++w++ XP_028555078.1 163 KDAWSPEEEMKLMEAHLKHGNK-WAEIAKMLP-GRTDNSIKNHWNS 206 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 600 aa Download sequence
MYPMKAEESC AENKQSVTPS GSTISEGSNG FSRMSAAGSS PASSSPSHRR MTGPIRRAKG 60 GWTPEEDETL KHAVELHEGR SWKTIAKSVP GRTDVQCLHR WQKVLNPALV KGSWAPEEDG 120 TIIELVAQYG PTKWSVIARS LPGRIGKQCR ERWHNHLSPD IRKDAWSPEE EMKLMEAHLK 180 HGNKWAEIAK MLPGRTDNSI KNHWNSSLRK KAEFVLKTGK LPPADMPGIQ YGAEDKANSG 240 PNQNFNFSNK RLVASANILP ENCSSAHSSV PPKISEAENQ DSLMVPVSAE VSELNSLDEA 300 AKKSGKQIWV VPVLAQVSNL NDSLVIEGKS DTSDVPQCPA QASEIDSVHS RSDSGVSCFT 360 PEVCQNEKPS GTKLYPVADN LSSLCYKPPQ LEDIGVSVMS SLLFENNSLQ PAFKVETVSS 420 SDGHSTPSSV NVTRSFQPSI ESILRSAARS FQNTPSIIKR RSEAHSPVPP GTMSTNETRV 480 QDSCTPNEES VNNIEGSAFS VSKLSFSPCT INEDLLDKGK DFDISPPYRL WSKRKATFKP 540 VEKQLDFSLE KANMDVNTKI SSFEVNKNSY SPTNMHVWTM QGKKLKNDLA DLKTVTSPIR

Sequence ? help Back to Top

Protein Sequence Length: 600 aa Download sequence

MYPMKAEESC AENKQSVTPS GSTISEGSNG FSRMSAAGSS PASSSPSHRR MTGPIRRAKG  60
GWTPEEDETL KHAVELHEGR SWKTIAKSVP GRTDVQCLHR WQKVLNPALV KGSWAPEEDG  120
TIIELVAQYG PTKWSVIARS LPGRIGKQCR ERWHNHLSPD IRKDAWSPEE EMKLMEAHLK  180
HGNKWAEIAK MLPGRTDNSI KNHWNSSLRK KAEFVLKTGK LPPADMPGIQ YGAEDKANSG  240
PNQNFNFSNK RLVASANILP ENCSSAHSSV PPKISEAENQ DSLMVPVSAE VSELNSLDEA  300
AKKSGKQIWV VPVLAQVSNL NDSLVIEGKS DTSDVPQCPA QASEIDSVHS RSDSGVSCFT  360
PEVCQNEKPS GTKLYPVADN LSSLCYKPPQ LEDIGVSVMS SLLFENNSLQ PAFKVETVSS  420
SDGHSTPSSV NVTRSFQPSI ESILRSAARS FQNTPSIIKR RSEAHSPVPP GTMSTNETRV  480
QDSCTPNEES VNNIEGSAFS VSKLSFSPCT INEDLLDKGK DFDISPPYRL WSKRKATFKP  540
VEKQLDFSLE KANMDVNTKI SSFEVNKNSY SPTNMHVWTM QGKKLKNDLA DLKTVTSPIR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09370.2	1e-105	MYB family protein