PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028554386.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C3H

Protein Properties

Length: 649aa MW: 70361.7 Da PI: 6.2812

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028554386.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.8	3.4e-07	273	293	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_028554386.1 273 PCPDFRK-GACRRGDICEYAHG 293 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 649 aa Download sequence
MNHLNVETDG AFASVLELAA NNDVDGFQLS IVRNLSSIDE VGEWYGRKKV IEQRTPLMVA 60 ATYGSLDVLN LILKLSSADV NRYCSPDKTT ALHCAASGGS VDAVEAVKIL LSAGANPNCI 120 DANGDRPADV ITVPRKLSNA KAALEDLLGS SDGAVTEIHG QDLRVSTCTS NSLSLSSSTE 180 EDGSPSSDST SSPMNGKFQD HPSFPEKKEY PIDPSLPDIK NSIYATDEFR MFSFKVRPCS 240 RAYSHDWTEC PFVHPGENAR RRDPRKYHYS CVPCPDFRKG ACRRGDICEY AHGVFECWLH 300 PAQYRTRLCK DGTNCARRVC FFAHTNEELR PLYISTGSAV PSPRSSVSSA MEMAAMGLLP 360 GSPSSVSAIM SSFTPPMSPS TNAISHNSLN WPQPNVPALH LPGSNLQSSR LRSSLSARDI 420 PFDDYLMQDF ETQQLINDLC VSRLSSSAGN RIARSKNLDE LFSAEFQQQQ QSLLSPIKTG 480 MFSPKTNVDQ PITGHSSLLQ ASLGLSSSPG RMSPRSLDTG SPTSSRLAAF ALREKQQQNT 540 LRSLSSRELG TAASAAIVGS PVSSSWSRLS SLSKPVDWGA NGEDMGQLRR SSSFDLRSRG 600 EEPDVSWVQS LVKESPMEKP VAPAAGTNDD HAAVLGAWLE QMQLDQLVA

Sequence ? help Back to Top

Protein Sequence Length: 649 aa Download sequence

MNHLNVETDG AFASVLELAA NNDVDGFQLS IVRNLSSIDE VGEWYGRKKV IEQRTPLMVA  60
ATYGSLDVLN LILKLSSADV NRYCSPDKTT ALHCAASGGS VDAVEAVKIL LSAGANPNCI  120
DANGDRPADV ITVPRKLSNA KAALEDLLGS SDGAVTEIHG QDLRVSTCTS NSLSLSSSTE  180
EDGSPSSDST SSPMNGKFQD HPSFPEKKEY PIDPSLPDIK NSIYATDEFR MFSFKVRPCS  240
RAYSHDWTEC PFVHPGENAR RRDPRKYHYS CVPCPDFRKG ACRRGDICEY AHGVFECWLH  300
PAQYRTRLCK DGTNCARRVC FFAHTNEELR PLYISTGSAV PSPRSSVSSA MEMAAMGLLP  360
GSPSSVSAIM SSFTPPMSPS TNAISHNSLN WPQPNVPALH LPGSNLQSSR LRSSLSARDI  420
PFDDYLMQDF ETQQLINDLC VSRLSSSAGN RIARSKNLDE LFSAEFQQQQ QSLLSPIKTG  480
MFSPKTNVDQ PITGHSSLLQ ASLGLSSSPG RMSPRSLDTG SPTSSRLAAF ALREKQQQNT  540
LRSLSSRELG TAASAAIVGS PVSSSWSRLS SLSKPVDWGA NGEDMGQLRR SSSFDLRSRG  600
EEPDVSWVQS LVKESPMEKP VAPAAGTNDD HAAVLGAWLE QMQLDQLVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein