PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028554171.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family C3H
Protein Properties Length: 346aa    MW: 38505.5 Da    PI: 7.1438
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028554171.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.81e-09121142426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     + C++f++ G Ck+Gd C FaHg
  XP_028554171.1 121 VACPDFRK-GSCKRGDACEFAHG 142
                     68******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    
MMMMGEGVYR NPTVDVPPWS PFDDQFQLSA AGDYVLSDAA ISALRRYLPA NEVEPEPDAD  60
EGAELTDPPI DAYSCDEFRI YEFKVRRCAR GRSHDWTECP YAHPGEKARR RDPRKFHYSG  120
VACPDFRKGS CKRGDACEFA HGVFECWLHP ARYRTQPCKD GTACRRRVCF FAHTPEQLRY  180
LPHQKQQRID SYDGSPLRLD GYFSKGIVSS SPTSTLISPP MSPPAESPPV SPMGSRVNEL  240
LASIKKLQIS KVNSMPSSWG GLVSPGVGLR SGFHSLPSTP TKAPAAVGRG WLDLDGCPET  300
EEPVERVESG RALRAKIYER LSKESGLERP NISPNPDVGW VSELIM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-112C3H family protein