PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028553858.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

G2-like

Protein Properties

Length: 281aa MW: 31345.1 Da PI: 9.5955

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028553858.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.6	2.4e-32	107	160	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ XP_028553858.1 107 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 160 9****************************************************7 PP
2	Myb_DNA-binding	49.2	1.2e-15	108	159	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWTt ++ ++v+av++lGg+ t+k++ + m k +tl ++ks++q+y+ XP_028553858.1 108 RMRWTTTLHARFVHAVELLGGHeraTPKSVLELMDvKDLTLAHVKSHLQMYR 159 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence
MQVEEFFTET TNSMPSPNLS LSISVDSPQP QTELSLSSSS SPPLEELRKA SKSIKGIPIY 60 SNNTSSSNSS FPLLPKMPSY SAQNQYNTTL RSRLMWRLPV RRSMRAPRMR WTTTLHARFV 120 HAVELLGGHE RATPKSVLEL MDVKDLTLAH VKSHLQMYRT VKTTEKAAAS SGQSDGSGEE 180 DLTRDLGFGR LMDSRGSNQT MTVHDMDYTS AKRSNSSSRG IWLHSIPNEI DENRSENLSA 240 KVEQVNDLSS PSVSPKAVKE SINPSLEFTL GRPDWQSKKQ D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16560.1	5e-48	G2-like family protein