PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028553715.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 828aa MW: 95479.2 Da PI: 6.5085

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028553715.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.3	1.9e-21	86	176	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn+YA++vGF +++++s +s ++g++ k ++C kegkre +++++ ++ r r rt+C+a++kv k++ dg +++t+++leHnH+++ XP_028553715.1 86 DFYNQYARRVGFGTKIRRSWYSLDDGQCNKFMLTCCKEGKREYKNSERCSSYRLRLAARTDCQARIKVFKKYsDGMFHLTEVNLEHNHPVS 176 6********************************************9999*************99988*************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 828 aa Download sequence
MAEESPSGGH FERDLSVISV QDSSGGMSML EPDQMMDNNS NDVEEVKGGN LNLIDVDDCK 60 GKIQDVEDDG VPTVGMVFKT FEEVYDFYNQ YARRVGFGTK IRRSWYSLDD GQCNKFMLTC 120 CKEGKREYKN SERCSSYRLR LAARTDCQAR IKVFKKYSDG MFHLTEVNLE HNHPVSPSMS 180 RFFRSHKDLN DGAKKLPVMR GKGHRDISLG ENEQEHSSIK ARSSFLGKDD LEALQQFLAR 240 MQTNGTNFFH LMDLDEDGYL KNVFWADGRC KAAYQYYGDV VTFDTTYLTT NFETPLVSFV 300 GVNHHGHLVL FGCGLISDRS VESYRWLFKS WLSCMSGSYP SAIITDHFKA LQEAVAEIFP 360 GSHHRLCLLN IMKQMQENLG AYPEYKTIKG MMKKVVCDSL RADEFEEEWK IMIEKYVLED 420 NEWLRSLYEN RHSWVPAFVK ETFWAGMSST QHKENINSFF DGFIYPKTSL KQFICKYEST 480 LKCKFEKEAQ ADRDSFHKSP QLISKFYMED QLRKLYTVDM FKKFQEEVKA ILYCIPSLVR 540 VDGPVSIFEV KEPLRMKDGN QMENKNYEVT YTSNELEVRC ICCSFQMTGI LCRHTLSVLN 600 FLEIYEIPAH YIVERWRKDY KNIHVLPCFS NDIGANGPAE RYDNLYKHCL KFMDLGASSD 660 GLYEYALKII SEATNELFAS DPTSSDIQPR ACNPFNDKRI IGNENEEIYD LSELRQRSQP 720 LKKRKELAEK TVKNSKKKVP PRKPVVACQN DVLRMAPDTP QFDAHIWTQD NMSLADQVSP 780 PNLSIGNHFG VQMSQQHVLD NQAGLRWSFQ HIFQQAHTPD GPPGPWSG

Sequence ? help Back to Top

Protein Sequence Length: 828 aa Download sequence

MAEESPSGGH FERDLSVISV QDSSGGMSML EPDQMMDNNS NDVEEVKGGN LNLIDVDDCK  60
GKIQDVEDDG VPTVGMVFKT FEEVYDFYNQ YARRVGFGTK IRRSWYSLDD GQCNKFMLTC  120
CKEGKREYKN SERCSSYRLR LAARTDCQAR IKVFKKYSDG MFHLTEVNLE HNHPVSPSMS  180
RFFRSHKDLN DGAKKLPVMR GKGHRDISLG ENEQEHSSIK ARSSFLGKDD LEALQQFLAR  240
MQTNGTNFFH LMDLDEDGYL KNVFWADGRC KAAYQYYGDV VTFDTTYLTT NFETPLVSFV  300
GVNHHGHLVL FGCGLISDRS VESYRWLFKS WLSCMSGSYP SAIITDHFKA LQEAVAEIFP  360
GSHHRLCLLN IMKQMQENLG AYPEYKTIKG MMKKVVCDSL RADEFEEEWK IMIEKYVLED  420
NEWLRSLYEN RHSWVPAFVK ETFWAGMSST QHKENINSFF DGFIYPKTSL KQFICKYEST  480
LKCKFEKEAQ ADRDSFHKSP QLISKFYMED QLRKLYTVDM FKKFQEEVKA ILYCIPSLVR  540
VDGPVSIFEV KEPLRMKDGN QMENKNYEVT YTSNELEVRC ICCSFQMTGI LCRHTLSVLN  600
FLEIYEIPAH YIVERWRKDY KNIHVLPCFS NDIGANGPAE RYDNLYKHCL KFMDLGASSD  660
GLYEYALKII SEATNELFAS DPTSSDIQPR ACNPFNDKRI IGNENEEIYD LSELRQRSQP  720
LKKRKELAEK TVKNSKKKVP PRKPVVACQN DVLRMAPDTP QFDAHIWTQD NMSLADQVSP  780
PNLSIGNHFG VQMSQQHVLD NQAGLRWSFQ HIFQQAHTPD GPPGPWSG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	716	725	QRSQPLKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-136	FAR1 family protein