PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028553676.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family Trihelix
Protein Properties Length: 262aa    MW: 30193.8 Da    PI: 4.9399
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028553676.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix65.89.2e-2127109286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     Wt+qe+ +Li+a++e++ +l+rg+lk+++Weev++ +  + gf   +++ +qC++k+e+l+kry+ ++ + ++      s++p+fd+++
  XP_028553676.1  27 WTDQETGHLIDAYEERWYSLKRGQLKAQQWEEVAADVaTRCGFtipSKNGTQCRHKIEKLRKRYRSERLRPIR------SSWPFFDRID 109
                     ***********************************9977778844456999*****************99998......47*****998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MTAGGSSTLA AGVATAVPRK FNPGSPWTDQ ETGHLIDAYE ERWYSLKRGQ LKAQQWEEVA  60
ADVATRCGFT IPSKNGTQCR HKIEKLRKRY RSERLRPIRS SWPFFDRIDR MERGPLPISA  120
LPAFSEEDED SGEPRGSNTR SINGILREAV PWKDSRVSRN LGKRKRLTEE QEEDEEEEDD  180
DEENEEDYGG DVGEIAAELK RFGEGYVRME RKRMDVMREM EREWMEMEAK RMEMIMEAQR  240
GIMETIAGAF SKKSKNSVDM QG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.14e-26Trihelix family protein