PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028553582.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | C3H | ||||||||
Protein Properties | Length: 312aa MW: 34862.5 Da PI: 6.7315 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.5 | 8.1e-12 | 192 | 217 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C +Gd CkF+H+ XP_028553582.1 192 YQPDICKDYKETGYCGFGDACKFMHD 217 67789********************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence |
MADQSGDVCS FFKKPSRNKN IRKRTATEST EGEDENGDQE PQTSLPSQRP NKTLASDKAL 60 HFSTATSSSK PSGKDDGEIE PKSEAGLFHF ESSKLIQVQN DSRATASLQT ETEFDRDARA 120 IRERVLKRAE ESLKGKSGSE VSNEKVYRGI HGYTDYKAGF RREQTVAGEK AGGAHGPLRA 180 SEHIRVSARF DYQPDICKDY KETGYCGFGD ACKFMHDRGD YKSGWQMEKD WDEREKARKR 240 RLAMGGGGED GDGGSDDEDD HDLPFACSIC RRPFDDPVVT KCKHYFCEHC ALKLLHNFTI 300 IGNTLGKPFA HL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01350.1 | 1e-123 | C3H family protein |