PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028553402.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB
Protein Properties Length: 289aa    MW: 31903.2 Da    PI: 6.9359
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028553402.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.5e-171562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd +l+ +v  +G+g+W+ ++++ g++R++k+c++rw +yl
   XP_028553402.1 15 KGLWTAEEDAKLLAYVSTHGTGNWTNVPKKAGLKRCGKSCRLRWTNYL 62
                     678*******************************************97 PP
2Myb_DNA-binding44.92.7e-1471111446
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +T++E+el+v +++  G++ W+ Ia+ ++ gRt++++k++w++
   XP_028553402.1  71 FTPQEEELIVTLHATIGSR-WSIIANQLP-GRTDNDVKNYWNT 111
                      8******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    
MGIRPPCCDK LNVKKGLWTA EEDAKLLAYV STHGTGNWTN VPKKAGLKRC GKSCRLRWTN  60
YLRPNLKHEG FTPQEEELIV TLHATIGSRW SIIANQLPGR TDNDVKNYWN TKLSKKLALN  120
GIDPVTHRPI SEIKQSITTL HIAAATAAIS TQPFSSAAGV GLYDSRLTTL NRDLKKILLS  180
HSTPPPLEPA TLPAHWNEVN RNAAGVRALP PAPPTLQELE WIQFLAEDAF SCLEEQDACR  240
APSFVAVDAD FGGLEEAADG PSSFIEQILD RDREIMSEFA GFVGGHYYF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.16e-70MYB family protein