PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028553386.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

TALE

Protein Properties

Length: 468aa MW: 52220.5 Da PI: 8.9731

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028553386.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	23.5	9.8e-08	268	298	24	54
S--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 24 ypsaeereeLAkklgLterqVkvWFqNrRak 54 yps ++ LA+++gL+ +qV++WF N R + XP_028553386.1 268 YPSDVDKHILARQTGLSRNQVTNWFINARVR 298 9****************************88 PP
2	BELL	102	4.4e-33	134	202	4	72
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 elqk+ka Lls+leeVd +Yk+y+eq+ +v+ssFe +ag g+a++Y +lA+ka+SrhFr+L+d i+eq+ XP_028553386.1 134 ELQKRKANLLSMLEEVDGKYKKYCEQMAAVASSFESAAGEGAATVYLALASKAMSRHFRSLRDGIVEQM 202 89****************************************************************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence
MDRELHGQPA AAMGYSGFSL GGNFRMQGYE SHDLYSLQAT SAVDFPSIVS SPQQNFFFND 60 GKFISAQTVV TGSQRLKLSK YVFAAQELLN EFCNLGGFIR SSKQKSQSRR LVGGGTASSA 120 SLRDHSLKSL HILELQKRKA NLLSMLEEVD GKYKKYCEQM AAVASSFESA AGEGAATVYL 180 ALASKAMSRH FRSLRDGIVE QMQATMNAIA ERDPIAARGI SRGETPRLKL IDQFCVRQQK 240 AFQQGGIFMD QPPWRPQRGL IYYLIILYPS DVDKHILARQ TGLSRNQVTN WFINARVRLW 300 KPMIEEIYLE ETKEDELANP TRPAQQDNRN PNPSFSTDPK EPAKLLTDPD SLNSIINADR 360 RDHSNQRSFH NYQNQVQRTE HFGVADFDFS SYSECSGQSY SGNGVSLTLG LQHHNGGSSR 420 HDGGGFSFSP ANNQQFSMID GEAQKPTYRS LMRGQLLQDL GGQRAGWA

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence

MDRELHGQPA AAMGYSGFSL GGNFRMQGYE SHDLYSLQAT SAVDFPSIVS SPQQNFFFND  60
GKFISAQTVV TGSQRLKLSK YVFAAQELLN EFCNLGGFIR SSKQKSQSRR LVGGGTASSA  120
SLRDHSLKSL HILELQKRKA NLLSMLEEVD GKYKKYCEQM AAVASSFESA AGEGAATVYL  180
ALASKAMSRH FRSLRDGIVE QMQATMNAIA ERDPIAARGI SRGETPRLKL IDQFCVRQQK  240
AFQQGGIFMD QPPWRPQRGL IYYLIILYPS DVDKHILARQ TGLSRNQVTN WFINARVRLW  300
KPMIEEIYLE ETKEDELANP TRPAQQDNRN PNPSFSTDPK EPAKLLTDPD SLNSIINADR  360
RDHSNQRSFH NYQNQVQRTE HFGVADFDFS SYSECSGQSY SGNGVSLTLG LQHHNGGSSR  420
HDGGGFSFSP ANNQQFSMID GEAQKPTYRS LMRGQLLQDL GGQRAGWA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41410.1	2e-72	TALE family protein