PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028553060.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 322aa MW: 36539.9 Da PI: 4.6046

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028553060.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.4	1.5e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWT+eEd+llv+++k G g+W++ +++ g+ R++k+c++rw +yl XP_028553060.1 14 KGRWTAEEDQLLVQYIKTNGEGSWRSLPKKAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	47.3	4.6e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ ++eE++ ++++ + lG++ W+ Ia +++ gRt++++k++w+++l XP_028553060.1 67 RGNISKEEEDTIIQLRANLGNR-WSVIAGHLP-GRTDNEIKNYWNSHL 112 7899****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence
MGRAPCCEKV GLKKGRWTAE EDQLLVQYIK TNGEGSWRSL PKKAGLLRCG KSCRLRWINY 60 LREDLKRGNI SKEEEDTIIQ LRANLGNRWS VIAGHLPGRT DNEIKNYWNS HLSKKAEGLL 120 NKDDESCVNN VRKRKGGRPS KLAKKKKAEN EILSKEKGEK VKDVIEVRRS EEVESVVIDP 180 QPQQAVSKDF PSIEVLLGDE ENNKGETLSQ NEENEGREKE MNGVGVLEVL SNEDVGPSLD 240 EIEKLIDWEL EEIALRLWEG EGEGVGEILP WIWEDESHEI SGEFGGFIDS GKFDAFKYDD 300 DYLDNWLLSD VSEFSTWLGS CG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	132	147	RKRKGGRPSKLAKKKK
2	132	162	RKRKGGRPSKLAKKKKAENEILSKEKGEKVK
3	133	148	RKRKGGRPSKLAKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47460.1	4e-67	MYB family protein