PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028552447.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | ARF | ||||||||
Protein Properties | Length: 512aa MW: 56325.4 Da PI: 8.9414 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 80.4 | 1.8e-25 | 105 | 206 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f kvltpsd+++ g l++p+ +ae++ +++++ + t+ + d +g+sW++++iyr++++r++lt+GW++Fv+ ++L +gD+vvF ++ XP_028552447.1 105 FAKVLTPSDANNGGGLSVPRFCAESMfppldhMMDPPFQ-TIYVLDVHGKSWKFRHIYRGTPRRHLLTSGWSDFVNTKKLISGDTVVFI--RNLA 196 89*********************999*****96676664.9************************************************..5689 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+v+++r+ XP_028552447.1 197 GELFVGIRRT 206 99*****996 PP | |||||||
2 | Auxin_resp | 67 | 6.4e-23 | 241 | 324 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a++ a+++++Fev+++P ++ Fvv e ve+a+ v++ +GmR+kma+e+ dss++++ +Gt++ + rW +S Wr+L+ XP_028552447.1 241 AVRLADMGKPFEVLFYPMVGLLAFVVAKEMVEAAMVVPWGPGMRIKMAVESGDSSRTTWlQGTISCAAVPERGRWARSLWRMLE 324 57789999**************************************************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 512 aa Download sequence |
MLSSRLSRSL DYSIWKACAG GSTRLPAIGS GVFYFPEGHA EHATSPPDFS SLLRFPSFFQ 60 CNVTGISLLA NQHSDEVYAQ ISLDPRPSNA ATAMWPDDES SVSSFAKVLT PSDANNGGGL 120 SVPRFCAESM FPPLDHMMDP PFQTIYVLDV HGKSWKFRHI YRGTPRRHLL TSGWSDFVNT 180 KKLISGDTVV FIRNLAGELF VGIRRTGRSY GGQISLEGGG FKDEVFLRNR GRVLPESVIE 240 AVRLADMGKP FEVLFYPMVG LLAFVVAKEM VEAAMVVPWG PGMRIKMAVE SGDSSRTTWL 300 QGTISCAAVP ERGRWARSLW RMLEGLRAVN PWQVELISSV LPFHVMKKLK LTEGLKVLVE 360 GHGNMTFSIT GFGGTGMQSL IPAPYNISES PSGKQGARHI FSSLSSSLVP RSTNQVLSDN 420 IHGFDNAYYP NVSRSDGITQ VVKEVIHHNG VEIASACKTT MKSRKGSIQL FGQVIETEQL 480 DDRNVSTEFP LSFTHKQLLD KQIRVSAVGE CK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77850.1 | 1e-102 | ARF family protein |