PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028552410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | GATA | ||||||||
Protein Properties | Length: 257aa MW: 28733.3 Da PI: 6.7673 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.6 | 1.4e-17 | 168 | 201 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C + kTp+WR gp g+ktLCnaCG++y++ + XP_028552410.1 168 CMHCESRKTPQWRAGPMGPKTLCNACGVRYKSGR 201 99*****************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence |
MRCEDPFDSI DDLLDFQNYD DLLEMVDGCG NGGSVAPLQA PAITGGIHGR PAAITDEQIS 60 SEDDALSMCN DAEIINSDWL SNFLEDSELN FFNAIEFGLQ SPISVLETNI ASTSSTPNPH 120 MTRTRTKRPR AQVTHPISPS LTRWAPEPET MGKRRKSNVV DFNMARKCMH CESRKTPQWR 180 AGPMGPKTLC NACGVRYKSG RLFPEYRPAE SPSFVPSIHS NSHKKVVEMR RLRANLSSSE 240 DNVRAKNCDL LNYIRNK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 123 | 128 | RTRTKR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32890.1 | 9e-41 | GATA family protein |