PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028552189.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB_related
Protein Properties Length: 404aa    MW: 44516.2 Da    PI: 8.2128
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028552189.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.3e-154084147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r rWT+eE+ ++++a k++G   W++I +++g  +t  q++s+ qk+
   XP_028552189.1 40 RERWTAEEHNKFLEALKLHGRA-WRRIEEHIG-SKTTVQIRSHAQKF 84
                     78******************88.*********.************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    
MCVDGEASSA NCLHPMAEAD SSISEHAIKV RKPYIITKQR ERWTAEEHNK FLEALKLHGR  60
AWRRIEEHIG SKTTVQIRSH AQKFFSKVTR ESSSNNPSTV KAMEIPPPRP KRKPNHPYPR  120
KLGHLSIMKG PLIDAQLWPS IANQSVSEQE SKSPTSVLSA FGSDTSGTTA ADTLKPCMSP  180
VSSVDKTVSV EEILVEQITS AEYKCNKSSD TSPSLTLQDI SPMELDLSIQ DCFAAKEAPV  240
TGQNITCLRL FGRTVVVAGL QQQPSSKKNQ SEYQEPNMVS FPSLWNLYGV MPFHSSGALN  300
PSDQSPMPSK DESFLHNESS QTDSSTTSDS NSEAAEIGIQ MKKFPPAPVL KPSKNSAFSS  360
LIPYSANSNR GFVPYKRCVV EKERPRTPVA NIEGSSYWEK LGCQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.15e-40MYB_related family protein